PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000242.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 581aa    MW: 64701.4 Da    PI: 4.7393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000242.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.45.6e-1382125812374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++lL++cA a+s+g+ e+a++++++l++l+s +gdp qR+aay++e+Laar+a+s++ ly+al+++e +   ss +laa
  FANhyb_rscf00000242.1.g00001.1 212 KQLLFDCASALSEGNIEEASTMINELRQLVSIQGDPHQRIAAYMVEGLAARMASSGKFLYRALKCKEPP---SSYRLAA 287
                                     589*****************************************************************9...9****** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     +++++ev+P++kf++++aN aI ea++ ++rvHiiDfdi+qG Q+++L+q+La+ p++pp+lR+Tg+++pes+      
  FANhyb_rscf00000242.1.g00001.1 288 MQVLFEVCPCFKFGFMAANGAIIEATKDDKRVHIIDFDINQGNQYITLIQTLAQLPGKPPHLRLTGIDDPESVqrPVGG 366
                                     ***********************************************************************99888899 PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     l+++g+rL+++Ae lgv+fef++ va++++ +++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L+l ksl+P
  FANhyb_rscf00000242.1.g00001.1 367 LNTIGQRLEQLAEGLGVSFEFQA-VASKTSIVSPSMLDCRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRLAKSLRP 444
                                     ***********************.7****************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                     k+v+vveq++++n+++F+ rf+ea +yysa+fdslea +pres++r++vE+++l+r+ivn+vaceg+er+er e ++kW
  FANhyb_rscf00000242.1.g00001.1 445 KLVTVVEQDVNTNTTPFFPRFVEAYNYYSAVFDSLEAAIPRESQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKW 523
                                     ******************************************************************************* PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     r+r+ +aGF++ p+s++++++++ l+r++ ++ y+++ee g+l +gW+d++L+++SaWr
  FANhyb_rscf00000242.1.g00001.1 524 RARMAMAGFTSSPMSTSVTDSIQELIRMYCDR-YKIKEEMGALHFGWEDKSLIVASAWR 581
                                     ******************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.402185562IPR005202Transcription factor GRAS
PfamPF035141.9E-135212581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSLVRPVELS ATSYRKSKLY SLKGSNDTST QTFGADKSNT MYTTDSYSTE SYEFLDSPSE  60
EVVHPSSSSI SGSSFNEHGA SFHPRRAGSV SSFTTQNPSS TSMSTRLHDA YRTNIDSDYL  120
ESQSPDAVSF DDDKMRLKLQ ELERALLEDN DDEHDEEMIG SGQSMEIDGE WTEPIQNALL  180
HDSPKESSSS DSYLSSISSN KEISGTSLRT PKQLLFDCAS ALSEGNIEEA STMINELRQL  240
VSIQGDPHQR IAAYMVEGLA ARMASSGKFL YRALKCKEPP SSYRLAAMQV LFEVCPCFKF  300
GFMAANGAII EATKDDKRVH IIDFDINQGN QYITLIQTLA QLPGKPPHLR LTGIDDPESV  360
QRPVGGLNTI GQRLEQLAEG LGVSFEFQAV ASKTSIVSPS MLDCRPGEAL VVNFAFQLHH  420
MPDESVSTVN QRDQLLRLAK SLRPKLVTVV EQDVNTNTTP FFPRFVEAYN YYSAVFDSLE  480
AAIPRESQDR MNVEKQCLAR DIVNIVACEG EERIERYEVA GKWRARMAMA GFTSSPMSTS  540
VTDSIQELIR MYCDRYKIKE EMGALHFGWE DKSLIVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6721858026378Protein SCARECROW
5b3h_A1e-6721858025377Protein SCARECROW
5b3h_D1e-6721858025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458547.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2P6PSL60.0A0A2P6PSL6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004290577.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]