PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000238.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 662aa    MW: 73765.9 Da    PI: 8.3149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000238.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16347393455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  FANhyb_rscf00000238.1.g00007.1 347 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 393
                                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.06E-18338397No hitNo description
SuperFamilySSF474594.19E-20340407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19347401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MNSCIPDWNF EGDLPLTNQK KPSGPDHELV ELLWRNGQVV LHSQTNRKPG LNPNESRQVQ  60
KHDQMRVGGF YGNSGNLIHD EEAVSMIQYP LEDSFDKDFC SHFFSELPSC DPLEIEKPIK  120
QFGEEKFVKF DASNATHLVS SSPQTNVKSS TGVAYPENPM PPPRFQISNP TEKNQNLGGL  180
GKIVNFSQFS ALGKGDIGSS RKQIRGTEPG KLNQAEVREC SMMTVGSSYS GSNQVPNDFD  240
VSRASSNGDG TTVFSTGTLY NNVQKMMPLS EGGMTETLDP TLTSSSGGSG SSFGRGKQSN  300
VVNSNKRKGR DAEDSECQSK AAEIESAAGN KPAPRSGSSR RTRAAEVHNL SERRRRDRIN  360
EKMRALQELI PHSNKTDKAS MLDEAIEYLK SLQLQLQVMW MGGGMTPMMF PGVQHYMSRM  420
GMGMGPPAMP SMHNPIQLPR VPIVDQCMTV APPTNPAVMC QTPVLNPVDY RNQMQNPSFQ  480
EQYARLMGFH HMQTMSQPMN MFRFGSQPLP QSQMMAPTVM NTGPLSGGAA TNEGLSGKMT  540
VNCPDSDALR MIVNRLRCML ISMDYGPLTY ITRLLPMWKM GSELFLITQF KGSPIHSIYF  600
LWVIEKSLFI YAKEPLLQVF RHLNRALNLL RNPTNRDKSS DVSLWYEFFD SARESKIVFH  660
VP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351356ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303901.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_011467621.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A2P6S0J70.0A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004303901.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-57phytochrome interacting factor 4