PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000237.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | DBB | ||||||||
Protein Properties | Length: 256aa MW: 27361.7 Da PI: 5.1262 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.6e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl FANhyb_rscf00000237.1.g00007.1 4 QCNVCETSEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 28.1 | 4.2e-09 | 52 | 84 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC++C +++H FANhyb_rscf00000237.1.g00007.1 52 LPKCDICQEAVGYFFCLEDRALLCRKCDVAIHT 84 589*******9*********************3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.68 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.63E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.0E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.2E-16 | 50 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.001 | 50 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.74E-8 | 53 | 97 | No hit | No description |
Pfam | PF00643 | 3.2E-7 | 53 | 93 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKIQCNVCET SEATVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSAS HLPKCDICQE 60 AVGYFFCLED RALLCRKCDV AIHTVNSFVS GHRRFLLTGI KVGLEPNPPG GSGSGGGVAG 120 SSSSVKSESG AVAKCEGNNQ LAEECKVAPE SVAGMGFSGG SGGWADCGKL GDSDSSVLRS 180 SEEELEDYEC IGQVPELSWM VPQVPSPPTS SGLYWPKTYQ NPLDSAVFVP DVNYSDMQNS 240 LHYQQNGTVS KRRRQF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294165.1 | 1e-151 | PREDICTED: B-box zinc finger protein 22 | ||||
TrEMBL | A0A2P6Q9N9 | 1e-132 | A0A2P6Q9N9_ROSCH; Putative transcription factor interactor and regulator LIM family | ||||
STRING | XP_004294165.1 | 1e-151 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4566 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-62 | light-regulated zinc finger protein 1 |