PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000232.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 764aa    MW: 84994 Da    PI: 5.5799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000232.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21109164156
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  FANhyb_rscf00000232.1.g00002.1 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 164
                                     7999************************************************9877 PP
2START229.87.9e-722785012206
                                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke 70 
                                     + ++a++el+k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ +l++lv++++d++ 
  FANhyb_rscf00000232.1.g00002.1 278 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPatglpkRSIEASRETGVVFVDLPKLVQSFMDVN- 355
                                     56789***********************************885559********************************. PP

                                     CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--. CS
                           START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe 138
                                     qW+e+++    ka+t++vi++g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w++vdvS+d  +++  
  FANhyb_rscf00000232.1.g00002.1 356 QWKEMFPsiisKAATVDVINNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCSKQLSAEQWAVVDVSIDKVEDNI- 433
                                     ****************************************************************************98. PP

                                     -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     ++s+v+++++pSg++ie+ksngh+kv+wveh ++++++++ ++rs+v+sgla+ga++wva lq qce+
  FANhyb_rscf00000232.1.g00002.1 434 DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVQTMYRSIVNSGLAFGARHWVAMLQLQCER 501
                                     9*****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-2394160IPR009057Homeodomain-like
SuperFamilySSF466891.09E-2098167IPR009057Homeodomain-like
PROSITE profilePS5007118.269106166IPR001356Homeobox domain
SMARTSM003891.5E-18108170IPR001356Homeobox domain
PfamPF000461.3E-18109164IPR001356Homeobox domain
CDDcd000866.76E-17113164No hitNo description
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084839.33268504IPR002913START domain
SuperFamilySSF559613.98E-34270501No hitNo description
CDDcd088755.40E-112272500No hitNo description
Gene3DG3DSA:3.30.530.204.2E-5274484IPR023393START-like domain
SMARTSM002345.4E-72277501IPR002913START domain
PfamPF018524.2E-58278501IPR002913START domain
SuperFamilySSF559611.03E-14531751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MGVVDMSNNP PTSRTKDFFA SPALSLSLAG IFRDAGTPAE TAANREGEEG DEGSVGGRRR  60
SREDTAEISS ENSGPARSRS AEDIDFDAEL GEQDEDDGDG DNKNKKKKRK KYHRHTTEQI  120
REMEALFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKGEME  180
KLRDENKAMR EQINKSCCPN CGSATTSRDA TLTTEEQQLR IENARLKSEV EKLRAALVKY  240
PLGTSSPSSS TGQDQENRSS LDFYTGIFGL EKSRIMEIVN QAMEELQKMA TAGEPLWVRS  300
VETGREILNY DEYIKEFNIE VPATGLPKRS IEASRETGVV FVDLPKLVQS FMDVNQWKEM  360
FPSIISKAAT VDVINNGEGD NRNGAVQLMF AELQMLTPLV PTREVYFVRC SKQLSAEQWA  420
VVDVSIDKVE DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHLECQKS TVQTMYRSIV  480
NSGLAFGARH WVAMLQLQCE RLVFFMATNV PMKDSTGVAT LAGRKSILKM AQRMTSSFCR  540
AIGASSYHTW TKITSKTGDD IRIASRKNLN DPGEPIGVIL CAVSSVWLPV SPFTLFDFLR  600
DETRRNEWDI MLNGGPAQTI ANLSKGQDRG NAVTIQTMKS KENSMWILQD SCINAYESMV  660
VYAPVDITGM QSVMTGCDSS NMAVLSSGFS ILPDGLESRP MVITSRQEDR GSDSEGGTLL  720
TVAFQVLTNT SPTAKLTMES VESANTLISC TLRNIKTSLQ CEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKKKRK
2104110KKKKRKK
3106110KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302894.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2 isoform X2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H4Z0B20.0A0A2H4Z0B2_9ROSA; Glabra 2
STRINGXP_004302894.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]