PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000227.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 668aa    MW: 73900.4 Da    PI: 6.5085
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000227.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22116217199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ +
  FANhyb_rscf00000227.1.g00004.1 116 FAKTLTQSDANNGGGFSVPRFCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNNK 192
                                     89*********************999****996555555..89************************************ PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD +vF   + +++ l+v+++r+
  FANhyb_rscf00000227.1.g00004.1 193 KLVAGDAIVFF--RAENGDLCVGIRRA 217
                                     ***********..3488889****996 PP
2Auxin_resp106.33.6e-35277359183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ a ++++FevvY+Prast+eF+vk+++v++a++++++ G Rfkm fetedss++++ +Gtv++v+ +dp rWp+S+
  FANhyb_rscf00000227.1.g00004.1 277 AATLAVSGQPFEVVYYPRASTPEFCVKASSVRAAMQIRWCSGIRFKMPFETEDSSRISWfMGTVSSVHYADP-RWPDSP 354
                                     6788999*****************************************************************.****** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr L+
  FANhyb_rscf00000227.1.g00004.1 355 WRYLQ 359
                                     **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-36108219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-28112218IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-21115216No hitNo description
SMARTSM010191.3E-21116218IPR003340B3 DNA binding domain
PfamPF023627.0E-21116217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957116218IPR003340B3 DNA binding domain
PfamPF065072.0E-29277359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MKNNNNHSEK GLDSQFWHAC AGGMVQLPPI NSKVFYFPQG HAEYAQGNVD FGNSRIPALI  60
LSRISAIRYM ADPETDEVYA KMRLVPVRER GFDFEDDGVV GNNNGVQENP EKPSSFAKTL  120
TQSDANNGGG FSVPRFCAET IFPRLDYSAD PPVQTILAKD VHGEIWKFRH IYRGTPRRHL  180
LTTGWSNFVN NKKLVAGDAI VFFRAENGDL CVGIRRAKRG IGGGPEYPCG WNTPSGNSCS  240
QYDGYSGFSR ENGNKLMDKN SSGTTRGRVK AEHVIEAATL AVSGQPFEVV YYPRASTPEF  300
CVKASSVRAA MQIRWCSGIR FKMPFETEDS SRISWFMGTV SSVHYADPRW PDSPWRYLQV  360
AWDEPDLLQN VRSVSPWLVE LVSSIPAIDL SPFSPPRKKL RLQQTPDYSL LGQLPLQSVY  420
GNFLTSSNTV CNLSDNIPAG IQGARQAHFG LSSSNFLNNL PPGLIPVGFQ QLGHVAPPGT  480
PGGNFMRIAE TNEDIPCRVT EGIPYHNLRD NDERKTPHIF LFGQLIVEGQ QTSKSSSGDD  540
SSSCPEKTGN SSDGSGSALH RNDSVENCSD GGSDHNLETG LCKVFVKSGD AGTLDLSVFR  600
SYQELYRKLA NMFGKENSDM LSNVLYRDAT GAIRHTGDEP FRQPEDFIWH DGYNCNACLE  660
DQRDQKTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-72138040388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308786.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6SJD90.0A0A2P6SJD9_ROSCH; Auxin response factor
STRINGXP_004308786.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]