PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000204.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 50aa MW: 5958.62 Da PI: 6.7887 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 38.3 | 2.7e-12 | 2 | 31 | 30 | 59 |
TT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59 +C+vkk+ver aedp++v++tYeg+H h+ FANhyb_rscf00000204.1.g00010.1 2 DNCRVKKRVERLAEDPRMVITTYEGRHAHS 31 69***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 11.497 | 1 | 33 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-4 | 1 | 32 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-8 | 2 | 32 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-10 | 2 | 31 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-8 | 3 | 30 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
MDNCRVKKRV ERLAEDPRMV ITTYEGRHAH SPSHDLEDSE SPSRLNNFFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288129.1 | 7e-30 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011464710.1 | 7e-30 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011464713.1 | 7e-30 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 1e-16 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2P6RRK4 | 2e-26 | A0A2P6RRK4_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004288129.1 | 3e-29 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-19 | WRKY DNA-binding protein 13 |