PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000184.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 884aa    MW: 97723.1 Da    PI: 6.1637
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000184.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.3e-16588626240
                             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                      +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  FANhyb_rscf00000184.1.g00004.1 588 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 626
                                     589**********************************96 PP
2TCR50.44.5e-16674712139
                             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                     ++k+gCnCkks+ClkkYCeC++ g+ Cs  C+Ce+CkN 
  FANhyb_rscf00000184.1.g00004.1 674 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 712
                                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18587628IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903588714IPR005172CRC domain
PfamPF036381.2E-11590625IPR005172CRC domain
SMARTSM011142.8E-16674715IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-11676712IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MDTPERNQIG GTPKAKFEVN PFSLLFNSVC FFEFGSKVVV VLWVVFFVGY VGFWLSCGFR  60
SQLIIVSNLT LLMLDEDVWM DSPVFNYLNS LSPIKPVKSV HFTQTFSSLS FASLPSVFTS  120
PHVSSHRESR FLKRHNASDD PSKPEFSPES GNKVCASEDD AELYNNSSKI QEDCVQVVSI  180
GEASVEPSSE QSKFVIELPR NLNYDCGSPD CNTSRCGINK EDFDPELAEF SASVAQYVQE  240
TSDKGSSEDE AQQQVTCQSE QTKEGTGCDW ESLISNAADI LIFDSPSSTE AFKELMNHSL  300
GPMTRFSTSI MPHLPQHNIS DKQLVQVNDT IGSGQQLQID DHSSQSGEAS ELKETEHMPN  360
HLNEYMVNNP IVKADNKAET SKPVINLHRG LRRRCLDFEM TGARRKSYND VSDYSSSLLS  420
QSNENVTTTD KRLISTKPGG ESSRCILPGI GLHLNALATT SKDYTIIKNE NSASGRELSL  480
PNSNASIHSP TAGQGSVYES FPSAYSERDM DSTENGVQLS QDASQASTLL ANEDFNQNSP  540
KKKRHVLSPS FCYLSYHVGY DFCFFYMSSN IFNWICRRRT EHTGEAEACK RCNCKKSKCL  600
KLYCECFAAG VYCIEPCSCQ DCFNKPIHED TVLATRKQIE SRNPLAFAPK VIRNSDSAAP  660
EYGDESSKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC SIGCRCEGCK NAFGTKEGSI  720
IGTEAELDEE ETEAAVKSVA DRDQQKNDIQ KHEEQTSALP TTPLRLSRQL VPVLFSSKSK  780
PPRSSVFSIE GSSSGVYASQ KLRKSNILRP ESKFDQRHSQ TVQEDEMPDI LQGDCSPTSG  840
VKTASPNSKR VSPPCTFGSS PGRRSGRKLI LQSIPSFPSL TPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1659071112120Protein lin-54 homolog
5fd3_B1e-1659071112120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296665.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2P6QPF20.0A0A2P6QPF2_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004296665.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-160TESMIN/TSO1-like CXC 2