PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000173.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 758aa    MW: 82305.6 Da    PI: 5.2522
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000173.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.81.4e-1199141143
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 
                                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q
  FANhyb_rscf00000173.1.g00004.1  99 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQ 141
                                     688999*********************************9866 PP
2START2213.7e-692805021206
                                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 
                                     ela +a++el+++a+ +ep+W+ s     + +n+de++++f+++ v     ++ ea+r+s+vv+m++ +lve+l+d++ 
  FANhyb_rscf00000173.1.g00004.1 280 ELAVAAMEELIRMAQIGEPLWMNSIdgstTVLNEDEYIRTFPRGIVpkqsgFKCEASRESAVVIMNHNNLVEILMDVN- 357
                                     57899********************999999*************99********************************. PP

                                     CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--. CS
                           START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe 138
                                     qW++ +     +a+tl+v+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+++  + 
  FANhyb_rscf00000173.1.g00004.1 358 QWSTVFSgivsRAMTLDVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHVDGTWAVVDVSLDNQRGYT- 435
                                     ***************************************************************************986. PP

                                     -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                      s +  ++++pSg+li++++ng+skvtwvehv++++r +h+l+++lv+sg a+gak+wvatl+rqce+
  FANhyb_rscf00000173.1.g00004.1 436 -STLKSCQRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 502
                                     .57777889*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-1485142IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1086143IPR009057Homeodomain-like
PROSITE profilePS500718.50396143IPR001356Homeobox domain
SMARTSM003895.2E-497151IPR001356Homeobox domain
CDDcd000862.12E-1099143No hitNo description
PfamPF000463.3E-999141IPR001356Homeobox domain
PROSITE profilePS5084843.201271505IPR002913START domain
SuperFamilySSF559613.92E-35273504No hitNo description
CDDcd088757.39E-127275501No hitNo description
SMARTSM002344.8E-65280502IPR002913START domain
PfamPF018522.2E-58281502IPR002913START domain
Gene3DG3DSA:3.30.530.209.1E-5376501IPR023393START-like domain
SuperFamilySSF559611.16E-24521749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMMGSNG NLGGYGSSSG LTLGQPANMM EAGGHFGNPL EMMATQNTSE  60
SELNARLGDD FDSATKSGSE NLEGGGSGDD GQDPRPNKKK RYHRHTQHQI QEMEAFFKEC  120
PHPDDKQRKE LSRELGLEPL QTQHERHENT NLRNENEKLR ADNMRYREAL SNASCPNCGG  180
PTAIGEMSFD EHHLRLENAR LREEIDRISA IAAKYVGKPV GNYPHMSSPV PPHRSPLDLG  240
VGNMGTSPHG FLLNSDMYTS GDIMRSIGAP SEADKPMIIE LAVAAMEELI RMAQIGEPLW  300
MNSIDGSTTV LNEDEYIRTF PRGIVPKQSG FKCEASRESA VVIMNHNNLV EILMDVNQWS  360
TVFSGIVSRA MTLDVLSTGV AGNYNGALQV MTAEFQVPSP LVPTRESYFV RYCKQHVDGT  420
WAVVDVSLDN QRGYTSTLKS CQRRPSGCLI QEMPNGYSKV TWVEHVEVDE RGVHNLYKQL  480
VNSGNAFGAK RWVATLDRQC ERLASALATN IPTGDVGVIT TQEGRKSMLK LAERMVISFC  540
AGVSASTTHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKKVFEFL  600
RDENSRNEWD ILSNGGVVQE MAHIANGRDT GNCVSLLRSA NSSQSNMLIL QESCTDSTAS  660
YVIYAPVDIV AMNVVLNGSD PDYVALLPSG FAILPDGTSG SNSGEAESGG SLLTVAFQIL  720
VDSVPTAKLS LGSVATVNNL IACTVERIKA SLSLDNEA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463209.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2P6S2C70.0A0A2P6S2C7_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004287935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2