PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000160.1.g00014.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LSD

Protein Properties

Length: 157aa MW: 16421.3 Da PI: 8.2043

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000160.1.g00014.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	40	64	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V FANhyb_rscf00000160.1.g00014.1 40 CSGCRNLLLYPVGATSVCCAVCNAV 64 ************************9 PP
2	zf-LSD1	46.6	5.4e-15	79	103	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV FANhyb_rscf00000160.1.g00014.1 79 CGGCHTLLMYIRGATSVQCSCCHTV 103 ************************9 PP
3	zf-LSD1	41.7	1.9e-13	117	141	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V FANhyb_rscf00000160.1.g00014.1 117 CGNCRMLLMYQYGARSVKCAVCNFV 141 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	2.5E-4	31	138	No hit	No description
SuperFamily	SSF48695	1.35E-5	37	138	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	1.1E-12	37	67	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-10	40	64	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.0E-14	76	105	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-12	79	103	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.5E-12	114	144	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-12	117	141	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MHLKAKNIMP VPLAPYPTPP APYTPPAAAA VNGVQSQLVC SGCRNLLLYP VGATSVCCAV 60 CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC 120 RMLLMYQYGA RSVKCAVCNF VTSVGVSTST PEQKFTN

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300252.1	1e-108	PREDICTED: protein LOL1
Swissprot	Q93ZB1	3e-81	LOL1_ARATH; Protein LOL1
TrEMBL	A0A2P5C7N2	7e-92	A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRING	XP_004300252.1	1e-108	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8187	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	3e-67	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]