PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000157.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 381aa    MW: 42589.6 Da    PI: 9.1423
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000157.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.2e-40100177178
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                     +C v+gC+adls+++eyhrrh+vCe hsk+p v+++g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++
  FANhyb_rscf00000157.1.g00002.1 100 TCLVDGCKADLSRCREYHRRHRVCELHSKTPIVVIRGQQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 177
                                     5**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3194162IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5398175IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-3799180IPR004333Transcription factor, SBP-box
PfamPF031101.8E-29101174IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEWDYKDFAW DSTDDDQLDQ QLEENDLAAL VGSSSTRSRG GESSSSFNLV DLKLGSTTSA  60
EVVAPIATKP SVLVSSSSLS RTRRVDHHQK LKVSSSSTAT CLVDGCKADL SRCREYHRRH  120
RVCELHSKTP IVVIRGQQKR FCQQCSRFHS LVEFDEVKRS CRKRLNGHNQ RRRKPKPESL  180
YFTSKNFLAN FKGPRILHFG TPQLCATTNV RSLWPFEAKN TADHQPMLYN RHQRLQAVDH  240
LRTPPNSFTN NGGADKQFIF LQTNDPKLSA FNQAAIPQAF TQEPFPTLNA AAALPQSTRA  300
AAGSAISFDG TTRSIDPSCA LYLLSSSNPT HSLVNTSLSH MVQPNMVTST DSGHQQHQMK  360
SVFELPSYSS NNHVEDKYCL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-2794174484squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304529.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A2P6S6I10.0A0A2P6S6I1_ROSCH; Putative transcription factor SBP family
STRINGXP_004304529.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-44SBP family protein