PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000155.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 447aa    MW: 50327.7 Da    PI: 6.8793
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000155.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-391653123134
                             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceae 76 
                                      kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+LGfdk+skt+ WLl++a p+i +  +      ++ss sece +
  FANhyb_rscf00000155.1.g00003.1 165 CKKDRHSKIRTARGLRDRRMRLSLDVARNFFGLQDMLGFDKASKTVAWLLNKAGPEIGKVREMsgqneNQSSVSECEVV 243
                                     69********************************************************999995444333333555333 PP

                             TCP  77 sssssasnsssg............kaaksaa..kskksqksaasalnlakesrakarararertrekmrikn 134
                                     s   +a++   +            ++++++    + +++k++a ++ lak sr karara+ertrekm  ++
  FANhyb_rscf00000155.1.g00003.1 244 SGTDEAAT---DeiidkisrkpssSSCANNRikRTVRQPKKNAFFNPLAKASRVKARARAKERTREKMERRQ 312
                                     33333332...244466667777744544444244455555555677888******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.834166224IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-40166310IPR005333Transcription factor, TCP
PROSITE profilePS5137011.055290307IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MFPYSSNVFS TGTTGNYSYY EPAAFAHDQP FSIQGRPFLN DLTINPNCNF ASVVSGSKQD  60
QDLLENTHHH MHPPLSFVYF PSPLEDDDVL LHHHHHHELL SLHENTLSAS HHHHHQTGTP  120
LTAMVEWDSN KDDQLLIMSK EGEQQQQQQQ QQQQQILIPT ARRSCKKDRH SKIRTARGLR  180
DRRMRLSLDV ARNFFGLQDM LGFDKASKTV AWLLNKAGPE IGKVREMSGQ NENQSSVSEC  240
EVVSGTDEAA TDEIIDKISR KPSSSSCANN RIKRTVRQPK KNAFFNPLAK ASRVKARARA  300
KERTREKMER RQPKPCDDVD QAKKMELDLS QLSSWSTFQT GEESGGTQSH NNLNNQSSLE  360
VLAEEEPMSN FQAAGAAGVV HQDLIEIDGH DAAANLVTTG KWSLSSIFHS LQNSSASISQ  420
EQHQLFADSQ FYGKPWEVYN SSTHNGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301078.10.0PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A1Q1NA260.0A0A1Q1NA26_FRAVE; PCF transcription factor 9
STRINGXP_004301078.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-25TCP family protein