PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000153.1.g00012.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 1164aa MW: 129226 Da PI: 7.7576

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000153.1.g00012.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.5e-06	125	181	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +eL++ g++ +qV+ +F +R + +k FANhyb_rscf00000153.1.g00012.1 125 KRPRDLLNPKAIKYMQSVFSVKDAITKKESRELSALFGVSVSQVREFFNTQRSRVRK 181 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.863	122	182	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-6	124	184	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-4	124	186	IPR001356	Homeobox domain
CDD	cd00086	1.96E-4	125	181	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-5	125	189	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1164 aa Download sequence Send to blast
MWVLLTYSAP TLFLHPLRFV KALTLTLSPS VIKVHLLCFP ILHALTFPNS QFQASRSSPA 60 MEDPSKLEIG NSVVSFHKFV DSQRQLFHSQ IDELQKFVVT QCKLTGANPL SQEMAAGALS 120 INIGKRPRDL LNPKAIKYMQ SVFSVKDAIT KKESRELSAL FGVSVSQVRE FFNTQRSRVR 180 KIVQLSREKA IRSTEHKGLL EGVPTSFDPL IPLNPVPLNT IGPSNVNPLP LNTIGPSDVN 240 LLPLNTIGPS DVNPLPLNTI GPSNSNPLPL NTVGPSNVED APSCSTQDDT PPGLDDVDKH 300 FVENIFNLMR KEETFSGQVK VLELILRIQN SSVLCWFLTK GGVMILVTWL TQAADEEQTS 360 VILVILKVLC HLPLSKALPA HIIDEAIGDD PWNSNGDVHE NILALPFESA DRLRKSESSE 420 PMKLLTASSD DSNKKHILGV SSSRILHFEF VIVLSQVMYY ISRNLVTEFR GRRKVQLVEQ 480 PGQKTAGRSS QAARATPVSQ ARPMSVDDIQ KAKLRAQYMQ SKYGKSASSN ENKEVKAEGV 540 NKLPVSQAST LPVVYIVPVW SSIEESKKPA TLPFKERETP DMSVQSITSF QPMAPKLKTD 600 IKEHIWEKCR RVQVPWKTPP DKIEQHWPER RLILIRFGHL FSEIDPLPVL SNIINFFFTP 660 FPFLSAEIKL NPEWRVGGGE NGKEMEVQKN RNHREQETIY KTLKEIPPNP KEPWDIEMDY 720 DDSLTPVIPT EQPPDTDCTE TQPSHRQEVN NAAETLVPPP QGVNSVVSPP TNTASSTAEP 780 DLELLAVLLK NPELVFALTS GQAANLSSED TVKLLDMIKA GGAGFAGSLN GLASKMEEKV 840 EVSLPSPTPS RNPGTVWPSM KQVANFELGG GLGLLSGWRP EATRNAFSQQ NSMQNRVSPG 900 YSSPAMVANN SVLSQLPSAL TSPLPQRLSG AQQAVPAYSP EHVHQIPHST TVPSHLQHNY 960 SNMAVPSVWG ESTSNRKPGP LYNSYNVAAE RQPNSLPPPF LSTLTQQQRH SPQPLQQQTR 1020 YSESHYSESP QYSESPYFSK PPTVKQGPPL SDSWRSGRQG LPSNYHYLEN QNQYYNAPPS 1080 YGGGPLQQQP QLRSGPPYEG NEFVNNGGGF ESWSPPEDSP ARNAEYNMYG RNAYRPVERS 1140 RQTQTPGYRD YSRQGQTWPD RGRH

Sequence ? help Back to Top

Protein Sequence Length: 1164 aa Download sequence Send to blast

MWVLLTYSAP TLFLHPLRFV KALTLTLSPS VIKVHLLCFP ILHALTFPNS QFQASRSSPA  60
MEDPSKLEIG NSVVSFHKFV DSQRQLFHSQ IDELQKFVVT QCKLTGANPL SQEMAAGALS  120
INIGKRPRDL LNPKAIKYMQ SVFSVKDAIT KKESRELSAL FGVSVSQVRE FFNTQRSRVR  180
KIVQLSREKA IRSTEHKGLL EGVPTSFDPL IPLNPVPLNT IGPSNVNPLP LNTIGPSDVN  240
LLPLNTIGPS DVNPLPLNTI GPSNSNPLPL NTVGPSNVED APSCSTQDDT PPGLDDVDKH  300
FVENIFNLMR KEETFSGQVK VLELILRIQN SSVLCWFLTK GGVMILVTWL TQAADEEQTS  360
VILVILKVLC HLPLSKALPA HIIDEAIGDD PWNSNGDVHE NILALPFESA DRLRKSESSE  420
PMKLLTASSD DSNKKHILGV SSSRILHFEF VIVLSQVMYY ISRNLVTEFR GRRKVQLVEQ  480
PGQKTAGRSS QAARATPVSQ ARPMSVDDIQ KAKLRAQYMQ SKYGKSASSN ENKEVKAEGV  540
NKLPVSQAST LPVVYIVPVW SSIEESKKPA TLPFKERETP DMSVQSITSF QPMAPKLKTD  600
IKEHIWEKCR RVQVPWKTPP DKIEQHWPER RLILIRFGHL FSEIDPLPVL SNIINFFFTP  660
FPFLSAEIKL NPEWRVGGGE NGKEMEVQKN RNHREQETIY KTLKEIPPNP KEPWDIEMDY  720
DDSLTPVIPT EQPPDTDCTE TQPSHRQEVN NAAETLVPPP QGVNSVVSPP TNTASSTAEP  780
DLELLAVLLK NPELVFALTS GQAANLSSED TVKLLDMIKA GGAGFAGSLN GLASKMEEKV  840
EVSLPSPTPS RNPGTVWPSM KQVANFELGG GLGLLSGWRP EATRNAFSQQ NSMQNRVSPG  900
YSSPAMVANN SVLSQLPSAL TSPLPQRLSG AQQAVPAYSP EHVHQIPHST TVPSHLQHNY  960
SNMAVPSVWG ESTSNRKPGP LYNSYNVAAE RQPNSLPPPF LSTLTQQQRH SPQPLQQQTR  1020
YSESHYSESP QYSESPYFSK PPTVKQGPPL SDSWRSGRQG LPSNYHYLEN QNQYYNAPPS  1080
YGGGPLQQQP QLRSGPPYEG NEFVNNGGGF ESWSPPEDSP ARNAEYNMYG RNAYRPVERS  1140
RQTQTPGYRD YSRQGQTWPD RGRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470994.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2P6PWM1	0.0	A0A2P6PWM1_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004309678.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-172	HB-other family protein