PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000153.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 493aa    MW: 52845.8 Da    PI: 8.8647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000153.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-114571127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++ ++C +++rtG+C yG rC+++H++
  FANhyb_rscf00000153.1.g00004.1 45 PGVPNCVYYMRTGFCGYGVRCRYNHPR 71
                                    5789*********************96 PP
2zf-CCCH406.5e-13123147327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C+++++tGtCk+G++CkF+H++
  FANhyb_rscf00000153.1.g00004.1 123 EPVCQYYLKTGTCKFGASCKFHHPK 147
                                     789********************96 PP
3zf-CCCH37.63.6e-12168193227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++C+++++tG+Ck+G +CkF+H++
  FANhyb_rscf00000153.1.g00004.1 168 GESECSYYLKTGQCKFGLTCKFHHPQ 193
                                     7899********************97 PP
4zf-CCCH35.71.4e-11324350127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++++C++++rtG Ck+G++C+++H++
  FANhyb_rscf00000153.1.g00004.1 324 PGEPECQYYLRTGDCKFGPSCRYHHPR 350
                                     5799*********************96 PP
5zf-CCCH35.81.4e-11371396227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     +  +C f++++G+Ck+G++CkF H++
  FANhyb_rscf00000153.1.g00004.1 371 GVQPCTFYLQNGHCKFGSSCKFDHPM 396
                                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3574472IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-55071IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676120148IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10123147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267166194IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9168193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5169194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4172192IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826323351IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6327352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4329350IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6369396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807369397IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9371396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6371400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5373395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPEWSSG AAETGLEEQM WQLGLTSTES YPERPGVPNC VYYMRTGFCG  60
YGVRCRYNHP RDRAAMIVCL LRKKGKELGM GTDSGDMFLW GSLLHLVVAA VRATGDYPER  120
VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG GSLTRAPLNI YGYPLRPGES ECSYYLKTGQ  180
CKFGLTCKFH HPQPAGTTVP ASAPQFYQSV QSPSVPMPEQ FGGQSTGLRV ARPPLVPGSY  240
VQGAYGPVLI PPGVVPIPSW NPYSAPLSPA LSPGAQPTVG ATSLYGLTQL SSPPHALARP  300
YTSVPSSVGP SSSSPNEQTF PERPGEPECQ YYLRTGDCKF GPSCRYHHPR DRIAPRTNCL  360
LSPVGLPLRP GVQPCTFYLQ NGHCKFGSSC KFDHPMGTMR YSPSASSLDM PVAPYPVGSL  420
LGTLASSSSS ELRPELVSAR MPSSGNPSSS SVGLIFSQSG SVSLADVQLS SQTSVPISNG  480
RSTRQGGEVR RSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309682.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2P6PWH60.0A0A2P6PWH6_ROSCH; Putative transcription factor C3H family
STRINGXP_004309682.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-180C3H family protein