PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000151.1.g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 509aa MW: 56604.3 Da PI: 5.5097 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.2 | 1.3e-113 | 142 | 507 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 lv+ L++cAeav+ +d++ a+alL +l+++a g+++qR+a++f +AL+ rla v+ l a+ +++++ sse+ FANhyb_rscf00000151.1.g00004.1 142 LVQKLISCAEAVACRDKTHASALLYELRTNAQVFGTSFQRVASCFIQALSDRLAL-VQPLG-AVGVTTKTIGVSSEKDE 218 6899**************************************************8.44444.34444444456899999 PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegppslRiTgvgspesgs 154 al+l ++++P ++fsh++aN Ilea+ege+ vH+iD+++ ++G QW +L+++LasR++ p+lRiTgvg+ s FANhyb_rscf00000151.1.g00004.1 219 ALHLVYDICPHIRFSHFVANTSILEAFEGESSVHVIDLGMtlglQHGYQWRNLMDSLASRKGRLPRLRITGVGN----S 293 *************************************976222268889*************************....* PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 e+le++g+ L+ +A++++++fef + v+++le+l+ e++++ gE+l++n++lqlh l++es + +vL+++ + FANhyb_rscf00000151.1.g00004.1 294 GERLEAIGNELKLYAQNMELEFEFLA-VESNLENLNAEDFSLIDGEVLVINSILQLHCLVKESRGALN---SVLQTLYE 368 **************************.79*******************************88877777...8******* PP GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a lp+ + r+kvE++++g+ i+n+v+ceg +r+erhe+ FANhyb_rscf00000151.1.g00004.1 369 LSPKLMVLVEQDSSHNGPFFLGRFMEALHNYSAIFDSLDAMLPKYDTRRAKVEHFYFGEGIKNIVSCEGPARVERHERI 447 ******************************************************************************* PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Wr+r+++aGF+p+pl++ +qa l+k +s+gy++ e++g++vlgWk++p++++S+Wr FANhyb_rscf00000151.1.g00004.1 448 DQWRRRMRRAGFQPAPLKT--ITQATKWLEKNASEGYTIVEDKGCFVLGWKSKPIIAASCWR 507 *****************75..789*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.126 | 116 | 489 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-111 | 142 | 507 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MASGFYVQPC EVYGDNKCDE VIGLDLNLSS MSCLPFSSLS TLENSSAVWE IPFIDETRNL 60 KRVKLENSAD ESIVSTNYSL YSGSGSGSMY TGGFNSLSRI QIRDHISAYT RRYMAAEAME 120 EAASTLLGGE PEEEGSGDGM KLVQKLISCA EAVACRDKTH ASALLYELRT NAQVFGTSFQ 180 RVASCFIQAL SDRLALVQPL GAVGVTTKTI GVSSEKDEAL HLVYDICPHI RFSHFVANTS 240 ILEAFEGESS VHVIDLGMTL GLQHGYQWRN LMDSLASRKG RLPRLRITGV GNSGERLEAI 300 GNELKLYAQN MELEFEFLAV ESNLENLNAE DFSLIDGEVL VINSILQLHC LVKESRGALN 360 SVLQTLYELS PKLMVLVEQD SSHNGPFFLG RFMEALHNYS AIFDSLDAML PKYDTRRAKV 420 EHFYFGEGIK NIVSCEGPAR VERHERIDQW RRRMRRAGFQ PAPLKTITQA TKWLEKNASE 480 GYTIVEDKGC FVLGWKSKPI IAASCWRCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-64 | 149 | 506 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-64 | 149 | 506 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-64 | 149 | 506 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004310175.1 | 0.0 | PREDICTED: DELLA protein GAI1-like | ||||
TrEMBL | A0A2P6R0T1 | 0.0 | A0A2P6R0T1_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004310175.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 3e-77 | GRAS family protein |