PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000151.1.g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 509aa    MW: 56604.3 Da    PI: 5.5097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000151.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.21.3e-1131425071374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     lv+ L++cAeav+ +d++ a+alL +l+++a   g+++qR+a++f +AL+ rla  v+ l  a+ +++++   sse+  
  FANhyb_rscf00000151.1.g00004.1 142 LVQKLISCAEAVACRDKTHASALLYELRTNAQVFGTSFQRVASCFIQALSDRLAL-VQPLG-AVGVTTKTIGVSSEKDE 218
                                     6899**************************************************8.44444.34444444456899999 PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegppslRiTgvgspesgs 154
                                     al+l ++++P ++fsh++aN  Ilea+ege+ vH+iD+++    ++G QW +L+++LasR++  p+lRiTgvg+    s
  FANhyb_rscf00000151.1.g00004.1 219 ALHLVYDICPHIRFSHFVANTSILEAFEGESSVHVIDLGMtlglQHGYQWRNLMDSLASRKGRLPRLRITGVGN----S 293
                                     *************************************976222268889*************************....* PP

                            GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                      e+le++g+ L+ +A++++++fef + v+++le+l+ e++++  gE+l++n++lqlh l++es    +   +vL+++ +
  FANhyb_rscf00000151.1.g00004.1 294 GERLEAIGNELKLYAQNMELEFEFLA-VESNLENLNAEDFSLIDGEVLVINSILQLHCLVKESRGALN---SVLQTLYE 368
                                     **************************.79*******************************88877777...8******* PP

                            GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                                     lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a lp+ +  r+kvE++++g+ i+n+v+ceg +r+erhe+ 
  FANhyb_rscf00000151.1.g00004.1 369 LSPKLMVLVEQDSSHNGPFFLGRFMEALHNYSAIFDSLDAMLPKYDTRRAKVEHFYFGEGIKNIVSCEGPARVERHERI 447
                                     ******************************************************************************* PP

                            GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                      +Wr+r+++aGF+p+pl++   +qa   l+k +s+gy++ e++g++vlgWk++p++++S+Wr
  FANhyb_rscf00000151.1.g00004.1 448 DQWRRRMRRAGFQPAPLKT--ITQATKWLEKNASEGYTIVEDKGCFVLGWKSKPIIAASCWR 507
                                     *****************75..789*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.126116489IPR005202Transcription factor GRAS
PfamPF035144.7E-111142507IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MASGFYVQPC EVYGDNKCDE VIGLDLNLSS MSCLPFSSLS TLENSSAVWE IPFIDETRNL  60
KRVKLENSAD ESIVSTNYSL YSGSGSGSMY TGGFNSLSRI QIRDHISAYT RRYMAAEAME  120
EAASTLLGGE PEEEGSGDGM KLVQKLISCA EAVACRDKTH ASALLYELRT NAQVFGTSFQ  180
RVASCFIQAL SDRLALVQPL GAVGVTTKTI GVSSEKDEAL HLVYDICPHI RFSHFVANTS  240
ILEAFEGESS VHVIDLGMTL GLQHGYQWRN LMDSLASRKG RLPRLRITGV GNSGERLEAI  300
GNELKLYAQN MELEFEFLAV ESNLENLNAE DFSLIDGEVL VINSILQLHC LVKESRGALN  360
SVLQTLYELS PKLMVLVEQD SSHNGPFFLG RFMEALHNYS AIFDSLDAML PKYDTRRAKV  420
EHFYFGEGIK NIVSCEGPAR VERHERIDQW RRRMRRAGFQ PAPLKTITQA TKWLEKNASE  480
GYTIVEDKGC FVLGWKSKPI IAASCWRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6414950626378Protein SCARECROW
5b3h_A2e-6414950625377Protein SCARECROW
5b3h_D2e-6414950625377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004310175.10.0PREDICTED: DELLA protein GAI1-like
TrEMBLA0A2P6R0T10.0A0A2P6R0T1_ROSCH; Putative transcription factor GRAS family
STRINGXP_004310175.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-77GRAS family protein