PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000146.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 550aa    MW: 60718 Da    PI: 8.872
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000146.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3944104262
                          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                     ++++lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ 
  FANhyb_rscf00000146.1.g00010.1  44 HDQTLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVA 104
                                     6899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-293898IPR003851Zinc finger, Dof-type
PfamPF027013.2E-3345102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18948102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
CDDcd003871.06E-42419549IPR000206Ribosomal protein L7/L12
Gene3DG3DSA:3.30.1390.103.3E-25478549IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
SuperFamilySSF547365.06E-19479549IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
PfamPF005429.2E-22483546IPR013823Ribosomal protein L7/L12, C-terminal
ProDomPD0013263.0E-20484544IPR013823Ribosomal protein L7/L12, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDSSDWLQGS IHEDQSPMDS SSPLSGDILT CSRPLIERRL RPPHDQTLKC PRCDSTHTKF  60
CYYNNYSLSQ PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN KKVASKKQNE DHSPSMNPNH  120
LGSSSTSSHH NRTDLQLSFP DQMQFSHLNN LMLGAQGTGN PSFMDGRYGN INGMLENSNQ  180
LRPIDFMESK LEAIVGNARN YDFMGGGGDS LGIVGGLSNM GGGAHGLESA GFHGFCSSPF  240
GSMSLDHQGN NNGNNFMENC QRLMLPYEAN ENHQHHQNEI HDVKPNTKLL SLEWQEQGCS  300
DAGKQSSYGY LNGLGSWTGP RELPILLSSS SCLRAKEVPL GLHILYEALF SVTQKKIMRI  360
VAVARSFRAR PTLPKATGHL QVRAFQPDFK PRDPKAKPIR YKYPEVYNPY GPRPPPSDKI  420
VQLAERIAAL APAERCQLGP ALVERLKLPQ MQHISTEGMD LGAQGGAAGV SKVEEKKVEK  480
TAFDVKLEKF EASAKIKVIK EVRAFTSLGL KEAKDLVEKA PCVLKQGLTK EEANDMIEKL  540
KAAGGVAVME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rqu_A1e-124795455011550S ribosomal protein L7/L12
1rqu_B1e-124795455011550S ribosomal protein L7/L12
1rqv_A1e-124795455011550S ribosomal protein L7/L12
1rqv_B1e-124795455011550S ribosomal protein L7/L12
4v4v_B31e-124795454911450S ribosomal protein L7/L12
4v4v_B51e-124795454911450S ribosomal protein L7/L12
4v4w_B31e-124795454911450S ribosomal protein L7/L12
4v4w_B51e-124795454911450S ribosomal protein L7/L12
4v7d_AL1e-124795455011550S ribosomal protein L12
4v85_BJ1e-124795455111650S ribosomal protein L7/L12
4v85_BK1e-124795455111650S ribosomal protein L7/L12
4v85_BL1e-124795455111650S ribosomal protein L7/L12
4v85_BM1e-124795455111650S ribosomal protein L7/L12
4v89_BJ1e-124795455111650S ribosomal protein L7/L12
4v89_BK1e-124795455111650S ribosomal protein L7/L12
4v89_BL1e-124795455111650S ribosomal protein L7/L12
4v89_BM1e-124795455111650S ribosomal protein L7/L12
4v9o_A61e-124795455111650S ribosomal protein L7/L12
5kcs_1L1e-124795455111650S ribosomal protein L7/L12
6i0y_61e-124795455111650S ribosomal protein L7/L12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298945.10.0PREDICTED: dof zinc finger protein DOF5.6
SwissprotQ9FM033e-50DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLA0A2P6P5X50.0A0A2P6P5X5_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004298945.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.12e-49Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]