PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000146.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23898.2 Da PI: 5.3134 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.3e-15 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++++ +G+g W+++ + g++R++k+c++rw +yl FANhyb_rscf00000146.1.g00007.1 12 KGLWTAEEDRTLTEYINVHGKGKWNRVTKVTGLKRCGKSCRLRWMNYL 59 678*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.505 | 7 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 7 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-13 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 12 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.76E-21 | 14 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.16E-11 | 15 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 63 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MEDGGRNHGY KKGLWTAEED RTLTEYINVH GKGKWNRVTK VTGLKRCGKS CRLRWMNYLS 60 PTVKRGDFSE EENDLIIRLH NLLGNRPVVS DSRTGSGKNR QPNQQASPKE KFNSAELQQQ 120 PLPDDSNGGG YGEAAAQGGH GCDDDHEQEM MMISRDSDVE FSGMWETMMM GSNNDYDHQG 180 SFWLYNNNED DLNLSNPNYF MDPSLDHHHP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 12 | 86 | 7 | 80 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300899.1 | 1e-133 | PREDICTED: trichome differentiation protein GL1-like | ||||
Refseq | XP_011464012.1 | 1e-133 | PREDICTED: trichome differentiation protein GL1-like | ||||
TrEMBL | A0A2P6P5Y1 | 1e-104 | A0A2P6P5Y1_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004300899.1 | 1e-132 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-41 | myb domain protein 66 |