PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000145.1.g00013.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 1053aa MW: 119367 Da PI: 9.1833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000145.1.g00013.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G + Wk++a+ + +R+ +++ FANhyb_rscf00000145.1.g00013.1 46 QWTTEELKHFYEGYRKYGRD-WKKVASVVC-HRSVENV 81 6***************77.*****99.9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	12.154	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	1.79E-9	45	88	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-6	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	3.38E-4	47	81	No hit	No description
Pfam	PF06584	2.3E-32	556	656	IPR033471	DIRP domain
SMART	SM01135	1.7E-56	556	657	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1053 aa Download sequence Send to blast
MAPVRKTKGV NKRFPYNNEV ASNKYGDTAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR 60 KYGRDWKKVA SVVCHRSVEN VEALYTMNRC EVCVYLSSSD VSVLLEVPNC LFAYLSLPEG 120 TASVIGLTAM MCDYYAMLGR FFLSVNRIRP HAVKKRTPRV PVASNDKDNS KKYFSPARQG 180 IKTSTDGNDV NNAQEIAFSL TEPSQRGSSP QVSRTPKLKA KGSTPSPVQN GERMFAVTDM 240 KIARPHGGEL DEVGCELSLG SMQADYGMER YYLKRQKRKE SENNHLEDVK ESSSGTEEEQ 300 YNLSTVKGKL GTRVVGAKKA SSFHKKKTKT ANVGRDEDSS FDALLTLADL SLRMPEATAE 360 LESAAPVEEE NFNIAKKSKL KGNSSVTMVE DTTMKTSQFN SGIQKRKQKS PVKINENEAQ 420 TEFPWSDNQM IEATDEVNYV NKGKRSSHYN THQKHGKLVK PVGNSSPATD RERQEKNSGL 480 STVEVQYANQ ANLSLRDRSK RKEDIQKDAK SLQSTSYDQP NKLVRSVHKT ELDLERRLSN 540 CLSRYQARRW CAFEWFYSAI DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGRP 600 RRFSDQFLKE EKEKLHQYRE SVRKHYAELN AGTREGLPTD LARPLSVGQH VIAFHPRSRE 660 IHNGTVLSIE HSTYRVQFDQ PELGVADIMD IDCMPLNPLE NVPASFTKQN IIFNKSENFK 720 ELKINEQHKE GKTEEYMKVF STGNLNSPAV PCHIPPSTPQ ANKSSKHIEH KIEEKVCYCE 780 VKTVMPRMQA KEADVRALFE LTRALDKKDA VVSELRRMND DVFEDKCRDG HDSIKDSESF 840 KKEYAAVLLQ LSEINDQQLS DCLRWRGKLI AFHMQVSSAL LCLRQRNTYR GSYPLISANP 900 LSGFSDSSGH SSSLCHVQEP ATHVYEIVES SRAKAREMVH VAMQAISSLK RENNIERIEE 960 VIDFVKKSDP KSKSLSNQSE DQFLSDLIAN CVAALFMIQT CTARQFSPAD VAWVLDRAVT 1020 SLKPICTQNL PVYGEIQKCM GIVRSQILAL VPT

Sequence ? help Back to Top

Protein Sequence Length: 1053 aa Download sequence Send to blast

MAPVRKTKGV NKRFPYNNEV ASNKYGDTAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR  60
KYGRDWKKVA SVVCHRSVEN VEALYTMNRC EVCVYLSSSD VSVLLEVPNC LFAYLSLPEG  120
TASVIGLTAM MCDYYAMLGR FFLSVNRIRP HAVKKRTPRV PVASNDKDNS KKYFSPARQG  180
IKTSTDGNDV NNAQEIAFSL TEPSQRGSSP QVSRTPKLKA KGSTPSPVQN GERMFAVTDM  240
KIARPHGGEL DEVGCELSLG SMQADYGMER YYLKRQKRKE SENNHLEDVK ESSSGTEEEQ  300
YNLSTVKGKL GTRVVGAKKA SSFHKKKTKT ANVGRDEDSS FDALLTLADL SLRMPEATAE  360
LESAAPVEEE NFNIAKKSKL KGNSSVTMVE DTTMKTSQFN SGIQKRKQKS PVKINENEAQ  420
TEFPWSDNQM IEATDEVNYV NKGKRSSHYN THQKHGKLVK PVGNSSPATD RERQEKNSGL  480
STVEVQYANQ ANLSLRDRSK RKEDIQKDAK SLQSTSYDQP NKLVRSVHKT ELDLERRLSN  540
CLSRYQARRW CAFEWFYSAI DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGRP  600
RRFSDQFLKE EKEKLHQYRE SVRKHYAELN AGTREGLPTD LARPLSVGQH VIAFHPRSRE  660
IHNGTVLSIE HSTYRVQFDQ PELGVADIMD IDCMPLNPLE NVPASFTKQN IIFNKSENFK  720
ELKINEQHKE GKTEEYMKVF STGNLNSPAV PCHIPPSTPQ ANKSSKHIEH KIEEKVCYCE  780
VKTVMPRMQA KEADVRALFE LTRALDKKDA VVSELRRMND DVFEDKCRDG HDSIKDSESF  840
KKEYAAVLLQ LSEINDQQLS DCLRWRGKLI AFHMQVSSAL LCLRQRNTYR GSYPLISANP  900
LSGFSDSSGH SSSLCHVQEP ATHVYEIVES SRAKAREMVH VAMQAISSLK RENNIERIEE  960
VIDFVKKSDP KSKSLSNQSE DQFLSDLIAN CVAALFMIQT CTARQFSPAD VAWVLDRAVT  1020
SLKPICTQNL PVYGEIQKCM GIVRSQILAL VPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296816.1	0.0	PREDICTED: protein ALWAYS EARLY 3
TrEMBL	A0A2P6QY75	0.0	A0A2P6QY75_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004296816.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding