PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000145.1.g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 50033.5 Da PI: 8.0396 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+++H++ FANhyb_rscf00000145.1.g00011.1 48 DEADCSYYLRTGICGYGSRCRYNHPR 73 6799********************96 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ FANhyb_rscf00000145.1.g00011.1 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.4e-12 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H+p FANhyb_rscf00000145.1.g00011.1 139 PGERECSYYVKTGQCKFGATCKFHHPP 165 5789*********************97 PP | |||||||
4 | zf-CCCH | 36.3 | 9.1e-12 | 300 | 325 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G++C+++H+ FANhyb_rscf00000145.1.g00011.1 300 PGQAECQYYLRTGECKFGSSCRYHHP 325 5789*********************8 PP | |||||||
5 | zf-CCCH | 35.6 | 1.6e-11 | 348 | 371 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC ++a+ G Ck+G+ CkF H+ FANhyb_rscf00000145.1.g00011.1 348 APLCTHYAQRGACKFGSACKFDHP 371 68*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.033 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.525 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 141 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 144 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.807 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-6 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 301 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 305 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 348 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 349 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 350 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MERYGRSTEG SQSDPSPEWT APGPETGLEE SMWQLALGPG ESYPERPDEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG ALRAGSVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPPLTGTQ PQVPSQAQAS 180 IVPTPTLYQT VQSPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP 240 AGASPLASPS TQTAVGSGAL YGINQISPSA PAYTGIFPTA PFSLGPPTTS QKEQSHPERP 300 GQAECQYYLR TGECKFGSSC RYHHPAEVVP LKTPVALSST GLPSRPGAPL CTHYAQRGAC 360 KFGSACKFDH PVGTLSYSPS ASSLTDVPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK 420 DSASTRMSSS PSTVSGSVGS TVSKDGVAHL GDQQSAQGSG PSTTSNNSTE SHSSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004296815.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q6NPN3 | 1e-160 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A2P6QY68 | 0.0 | A0A2P6QY68_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004296815.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-153 | C3H family protein |
Publications ? help Back to Top | |||
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