PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000137.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 1427aa MW: 154310 Da PI: 5.9428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000137.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.4e-10	543	585	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e +++ + +G++ +k+Ia+ + ++t +c+++++k+ FANhyb_rscf00000137.1.g00001.1 543 PWTPEEKEAFIEKLAVFGKD-FKKIASFFD-HKTTADCVEFYYKH 585 8***************99.*****.**********97 PP
2	Myb_DNA-binding	33.7	8.2e-11	758	798	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R+ +qck ++ FANhyb_rscf00000137.1.g00001.1 758 DWTDEEKSSFIQAVSSHGKD-FAMISRCVR-TRSQNQCKVFFS 798 5***************99.*****.******8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-14	527	588	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.148	539	590	IPR017884	SANT domain
SMART	SM00717	2.8E-10	540	588	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-7	542	585	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-7	543	587	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.621	754	805	IPR017884	SANT domain
SMART	SM00717	4.0E-8	755	803	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.5E-10	756	805	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-7	758	799	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-8	758	798	IPR001005	SANT/Myb domain
CDD	cd00167	9.10E-7	759	797	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1427 aa Download sequence Send to blast
KGESQPKNVT PLQSPSGDAT ACVTSAAPSE ETTSRKKPRL GWGEGLAKYE KKKVDPADVV 60 MNKDGDVCHV GNVEPVQSVS PHLADKSPRL MVLTDCASPA TPSSVACSSS PGVEEKSFGK 120 AAGVDNDINL YRSPANVSSS LHELLQSDDP SPMDCSTVRH TAMNKLLIWK GDISKVLEVT 180 ESEIDLLENE LKMLNSDSRD TCQCPAASSS LPVEGSDASG KEQATAINLV TRPAPLLVCS 240 SGDTDLEKLA LGNGEQGESC GLKDQDMDSP GTATSKFVDR LPLLNVASSG NSSGCAENQD 300 LVQTVEREAE CLTSGKDEEK SDPSVCGNSG REIVTPVSNG FGICASVVDT LCDSIFSSNK 360 ETASRVSDIF NKLLPKDNCK VNISGLGISS SWKNDSLLKE KFKARKQHLR FMERVITLKY 420 KAHQQLWKED VRLLSERKYR PKSHKKYDLG LRNSSNGYQK HRSSIRSRFS TPAGNLSLVP 480 TKEVEKFANK VLCDSQVKLY RNSLKMPALI LDKKEKIVTR FVSSNGLIED PCAVEKERTL 540 INPWTPEEKE AFIEKLAVFG KDFKKIASFF DHKTTADCVE FYYKHHKSAA FQKTKKKPDT 600 SKLGKSAANT YMINPGTKWN REVNAASLDI LGAASVMAAQ ADGSTRNRTG RLILGGYKNM 660 KTSQGDDATV ERSCSFDVIG DERETAAADV LAGICGSLSS EAVSSCITSS IDPGDGCWEW 720 KCQKVDSQAR RPLTPDVLQT VDDETCSDDS CGEMDPTDWT DEEKSSFIQA VSSHGKDFAM 780 ISRCVRTRSQ NQCKVFFSKA RKCLGLDLVH PRRGNEGASI VDDANGGESD TEDACVVEAG 840 SGISSDKSGC DTNEDLPLSV MDMDHEKTMN LQCDPLGSVE NNVKGEVDLL DKKALRSSDA 900 LEMEDRPKLV FDDLTNIMDV ADRLSESVPA QRSEAFSADV DAVIDNVAEK GSLVAESVVG 960 EGMSSDVPKL EGQDERCNTD TSGCGLQVSV HDSNSSGSAS DMAAEGSCSG LAAECLQQVS 1020 VEFNSMQKSL VNSLLHENLL ATAISENSAV VEYGKAINQD RLSSTSAKQE DRDKQSSSIR 1080 GDDVHKHLPG LPVLRNVDPA HVLKGYPLHM AMGKEINGHT SCGNLSEVKH LSKPDGDLTG 1140 HKPKDCILQF GNCKPRSSQV DFPLVHQKIE RRSDTTKAHS WSSSDTDKPS RNGDVKLFGK 1200 ILTSTSKSGS SIHENEEKGS HTHNLSNKSS NLKFSGHHNL DGNSGVLKFD SSNYAGIENV 1260 PRRNYSFWEG NKVQNGHPSF PDSALLLAKY PAAFGNFPTS SSKLEQQPLA VVRNDGHVNG 1320 ASVFPSREIS SSSSSSVDVK QRQETFDVSR RNGFESVSSL QQQGRGIVGM NGVNVVGRGG 1380 IMVGGPCTGV SDPVAAIRMH YAKTEQYGAQ GIIREEESWR GKGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1427 aa Download sequence Send to blast

KGESQPKNVT PLQSPSGDAT ACVTSAAPSE ETTSRKKPRL GWGEGLAKYE KKKVDPADVV  60
MNKDGDVCHV GNVEPVQSVS PHLADKSPRL MVLTDCASPA TPSSVACSSS PGVEEKSFGK  120
AAGVDNDINL YRSPANVSSS LHELLQSDDP SPMDCSTVRH TAMNKLLIWK GDISKVLEVT  180
ESEIDLLENE LKMLNSDSRD TCQCPAASSS LPVEGSDASG KEQATAINLV TRPAPLLVCS  240
SGDTDLEKLA LGNGEQGESC GLKDQDMDSP GTATSKFVDR LPLLNVASSG NSSGCAENQD  300
LVQTVEREAE CLTSGKDEEK SDPSVCGNSG REIVTPVSNG FGICASVVDT LCDSIFSSNK  360
ETASRVSDIF NKLLPKDNCK VNISGLGISS SWKNDSLLKE KFKARKQHLR FMERVITLKY  420
KAHQQLWKED VRLLSERKYR PKSHKKYDLG LRNSSNGYQK HRSSIRSRFS TPAGNLSLVP  480
TKEVEKFANK VLCDSQVKLY RNSLKMPALI LDKKEKIVTR FVSSNGLIED PCAVEKERTL  540
INPWTPEEKE AFIEKLAVFG KDFKKIASFF DHKTTADCVE FYYKHHKSAA FQKTKKKPDT  600
SKLGKSAANT YMINPGTKWN REVNAASLDI LGAASVMAAQ ADGSTRNRTG RLILGGYKNM  660
KTSQGDDATV ERSCSFDVIG DERETAAADV LAGICGSLSS EAVSSCITSS IDPGDGCWEW  720
KCQKVDSQAR RPLTPDVLQT VDDETCSDDS CGEMDPTDWT DEEKSSFIQA VSSHGKDFAM  780
ISRCVRTRSQ NQCKVFFSKA RKCLGLDLVH PRRGNEGASI VDDANGGESD TEDACVVEAG  840
SGISSDKSGC DTNEDLPLSV MDMDHEKTMN LQCDPLGSVE NNVKGEVDLL DKKALRSSDA  900
LEMEDRPKLV FDDLTNIMDV ADRLSESVPA QRSEAFSADV DAVIDNVAEK GSLVAESVVG  960
EGMSSDVPKL EGQDERCNTD TSGCGLQVSV HDSNSSGSAS DMAAEGSCSG LAAECLQQVS  1020
VEFNSMQKSL VNSLLHENLL ATAISENSAV VEYGKAINQD RLSSTSAKQE DRDKQSSSIR  1080
GDDVHKHLPG LPVLRNVDPA HVLKGYPLHM AMGKEINGHT SCGNLSEVKH LSKPDGDLTG  1140
HKPKDCILQF GNCKPRSSQV DFPLVHQKIE RRSDTTKAHS WSSSDTDKPS RNGDVKLFGK  1200
ILTSTSKSGS SIHENEEKGS HTHNLSNKSS NLKFSGHHNL DGNSGVLKFD SSNYAGIENV  1260
PRRNYSFWEG NKVQNGHPSF PDSALLLAKY PAAFGNFPTS SSKLEQQPLA VVRNDGHVNG  1320
ASVFPSREIS SSSSSSVDVK QRQETFDVSR RNGFESVSSL QQQGRGIVGM NGVNVVGRGG  1380
IMVGGPCTGV SDPVAAIRMH YAKTEQYGAQ GIIREEESWR GKGDIGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-14	506	592	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-14	506	592	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307402.1	0.0	PREDICTED: uncharacterized protein LOC101302495
TrEMBL	A0A2P6SJJ1	0.0	A0A2P6SJJ1_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004307402.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-173	MYB family protein