PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000133.1.g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 92aa MW: 10679.8 Da PI: 9.2718 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.7 | 2.2e-09 | 31 | 83 | 22 | 72 |
FAR1 22 skrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek 72 + ng i++r++vC+keg+r+ +k+ e++r r etrt C akl+++ ++ FANhyb_rscf00000133.1.g00009.1 31 GESNGLIKRREWVCNKEGTRKANKSLeqGESSRYARRETRTLCGAKLRIRYRH 83 467999**************999877546677779**************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-7 | 32 | 83 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MDASGNEEQL TMNPSENEEQ PSSGFEDGDK GESNGLIKRR EWVCNKEGTR KANKSLEQGE 60 SSRYARRETR TLCGAKLRIR YRHTVRQPKF MW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306860.2 | 3e-36 | PREDICTED: uncharacterized protein LOC101300183 | ||||
Refseq | XP_011457288.1 | 7e-38 | PREDICTED: uncharacterized protein LOC105349381 | ||||
STRING | XP_004292074.1 | 7e-17 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |