PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000126.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 547aa    MW: 60592.4 Da    PI: 7.0966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000126.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.3e-10197237545
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  FANhyb_rscf00000126.1.g00006.1 197 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 237
                                     788*************************9777777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-9193256IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415195239IPR004827Basic-leucine zipper domain
PfamPF001709.6E-7197237IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7197240No hitNo description
CDDcd147084.40E-24197249No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-7198241No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
PfamPF141445.7E-32307382IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGSRTVKIGS NDGDKLVTEM PSFVTPVPTS NPMSVHYPFW FASSGLASAC MQLEHEFTLY  60
VRMISVFSGT EGGSIRSSRI SDFERLEQTL GFNIEDAVDI GRSPVYDQNT STSRASGAKD  120
VQFGALNKKE LQPNLVAVSR SNHENWGESN MADGSPRTDT STDDTEDKNQ MIERNQMAGL  180
LASDSSDRSK EKPGDQKTLR RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQRA  240
RQQGIFISSS GDQAHSMSGN GVNSGHDGVC QLIVIQLIFI QLAQIGSLCA LAFDVEYARW  300
LEEHNKQINE LRAAVNSHAG DTELRTVIDN VIAHYDDIFR IKGTAAKADV FHILSGMWKT  360
PAERCFMWIG GFRSSELLKL LVRQLEPLTE QQVMGIYNLQ QSSQQAEDAL SQGMEALQQS  420
LSETLASGSP GPSGTSGNVA NYMGQMAMAM GKLGTLEGFL GQPSGMSMIS LTRITQPSVL  480
DQGCRWDVRT FLCGHPLLNA DNLRQQTLQQ MHRILTTRQS ARALLAINDY FSRLRALSSL  540
WLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467318.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X3
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2P6RTL10.0A0A2P6RTL1_ROSCH; Putative transcription factor bZIP family
STRINGXP_004303596.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-141TGACG motif-binding factor 6