PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000125.1.g00014.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 419aa    MW: 47221.6 Da    PI: 7.7568
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000125.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-1573132155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  FANhyb_rscf00000125.1.g00014.1  73 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 132
                                     789******************888855555447*************************98 PP
2AP252.21.5e-16174225155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  FANhyb_rscf00000125.1.g00014.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                                     89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1273132IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1673142IPR016177DNA-binding domain
CDDcd000181.96E-1973142No hitNo description
PROSITE profilePS5103219.58574140IPR001471AP2/ERF domain
SMARTSM003801.7E-2474146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1574141IPR001471AP2/ERF domain
PRINTSPR003673.1E-57586IPR001471AP2/ERF domain
CDDcd000188.10E-25174235No hitNo description
PfamPF008475.3E-12174225IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18174235IPR016177DNA-binding domain
SMARTSM003801.6E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18175234IPR001471AP2/ERF domain
PROSITE profilePS5103218.953175233IPR001471AP2/ERF domain
PRINTSPR003673.1E-5215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDQQLMMVKN EETPAGRRRL SAADREANQA ARCVKRRRRD PPAVIVDITK TELPLPEKPA  60
DPASVAATTK RSSRFRGVSR HRWTGRFEAH LWDKLSWNVT QKKKGKQVYL GAYDEEESAA  120
RAYDLAALKY WGTSTFTNFP ISEYEKEIEI MQSVIKRRVS GIPKKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSSYIRW  240
LKPKVDSTIS AQELETVAEP ENMPFMASNY IPAEESSLSQ INPFASDYLN SPRKQEVSLS  300
NVPLNTISKS SSPTALGLLL QSSIFRELVQ KNSNYSEDES TDGEDQKNQA HGGSDDEYGG  360
LFSYDQIGAN SSLVSSSNEE SIELQERELL HSPWNNFTST MLLNQTTKAD ASESLFFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11638RRRLSAADREANQAARCVKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304943.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q8TD140.0A0A3Q8TD14_FRAAN; Transcription factor AP211
STRINGXP_004304943.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.16e-88AP2 family protein