PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000114.1.g00017.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 316aa MW: 35777.2 Da PI: 9.9703

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000114.1.g00017.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.3	4.2e-29	232	281	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ FANhyb_rscf00000114.1.g00017.1 232 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 281 9************************************************* PP
2	G2-like	38	3.6e-12	290	314	27	51
G2-like 27 AtPktilelmkvkgLtlehvkSHLQ 51 AtPk++lelm+vk+Ltl+hvkSHLQ FANhyb_rscf00000114.1.g00017.1 290 ATPKSVLELMDVKDLTLAHVKSHLQ 314 9************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-14	229	286	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-25	230	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-21	232	284	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-6	233	281	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-10	290	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-8	290	315	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNTK PRSSGSWRRS AAEEEEAAEV DLGFWKRALD SRNSSISSDT 60 FSDLSLSNPT RLSHDQYSNS SRINHFHHQN HFGLQNGHNG NTNGLLFHAF QQNQLLDPQH 120 QLHHHQRVFE QQQHQQEQQG GFLGPELGFL RPIRGIPVYQ NPPPNPHLHH HHPPPNLFPF 180 SSQNIKPNLN LVDTTATSLS SSNSTLTSPS SNPFLRSRFL SRFPAKRSMR APRMRWTTTL 240 HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QLIYLYILGA TPKSVLELMD 300 VKDLTLAHVK SHLQVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-14	233	281	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300205.1	1e-153	PREDICTED: probable transcription factor KAN2 isoform X5
Refseq	XP_011465123.1	1e-153	PREDICTED: probable transcription factor KAN2 isoform X4
Swissprot	Q93WJ9	4e-35	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A2P6PAJ9	1e-145	A0A2P6PAJ9_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004300205.1	1e-153	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-37	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]