PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000112.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 390aa    MW: 42545.6 Da    PI: 7.4985
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000112.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28.1e-25113157145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  FANhyb_rscf00000112.1.g00009.1 113 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 157
                                     79****************************************986 PP
2QLQ64.33e-225288137
                             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                    s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  FANhyb_rscf00000112.1.g00009.1 52 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 88
                                    89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-135288IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-165387IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.5765388IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762113157IPR014977WRC domain
PfamPF088794.8E-21114156IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTLADLIGLP LSFCIVVGVG VVEMNSTGGG GGVGVGGNST GNLMGMGMGM RSPFTVSQWQ  60
ELEHQALIFK YMMAGMPVPP DLVLPIQKSF DSISQRFFHP SMGYCSFYGK KVDPEPGRCR  120
RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR SRKPVESQTM TQSSSTVTSL IVSGTSSGTV  180
SFQTLPLNSF GNTQGASSGT NQSHYQIDSI PFGIPNKDYR YLPGLKPDMG EHSFLSDTSG  240
SNRGLHMDSP LDGTWPVMPS RVTSFPTSTS GDGSVLQNDY RQNSFFNNDF PSGEPLKHEG  300
QPLRPFFDEW PKGRDSWSGL EDERSNQTSF STTQLSISIP MTSSDFSATS SQSPHASAIP  360
CPTLWNNSRT PPLTNPVTKE GAGYCDSIKC
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307837.10.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY42e-89GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A2P6SQ100.0A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004307837.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]