PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000106.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 691aa    MW: 75802.7 Da    PI: 8.1702
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000106.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.6e-34408464259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+geHnh+
  FANhyb_rscf00000106.1.g00008.1 408 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGEHNHQ 464
                                     8****************************************.***************8 PP
2WRKY104.84.6e-33578636159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+H+h+
  FANhyb_rscf00000106.1.g00008.1 578 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHKHD 636
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-30400466IPR003657WRKY domain
PROSITE profilePS5081124.099402466IPR003657WRKY domain
SuperFamilySSF1182903.92E-26406466IPR003657WRKY domain
SMARTSM007746.9E-37407465IPR003657WRKY domain
PfamPF031064.3E-26408464IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-37563638IPR003657WRKY domain
SuperFamilySSF1182903.53E-29570638IPR003657WRKY domain
PROSITE profilePS5081137.78573638IPR003657WRKY domain
SMARTSM007749.7E-39578637IPR003657WRKY domain
PfamPF031061.7E-25579636IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MNENQEEERQ PPSTSSRPPQ PSRPTITLPP RTSFETMFNN SGTGGNTGFS PGPMTLVSSF  60
FSDGEDCKSF SQLLAGAMMS PADRAGFPQL EERSSGDDSG FRLKNGPPSP MFPAGFLDSP  120
GGLFSPGQVV PESRRGQVCH LRVGWRLREA VSHQHQHGST PRRYQKLQKV EMNENQEEER  180
QPPSTSSRPP QPSRPTITLP PRTSFETMFN NSGTGGNTGF SPGPMTLVSS FFSDGEDCKS  240
FSQLLAGAMM SPADRAGFPQ LEERSSGDDS GFRFKNGPPS PMFPAGFLDS PGGLFSPGQV  300
SSIRICARMW SIICLESASK GAFGMTHQQA LAQVTAQASQ SQAYTFHIPN EHSTSMTQLP  360
VFSSSTTPPQ EMPSGIPDSG VSMKESSDIS LSDHRSQPSS LTVDKPNDDG YNWRKYGQKQ  420
VKGSEFPRSY YKCTHPSCPV KKKVERSVDG QITEIIYKGE HNHQRPQSKR PKDSGNQNGS  480
VQMNHDLASQ VHGGNSNKSK EGTYSMSKQG QESSLAISGT SDSEEVGDAE TKVEEKDEDE  540
PDAKRRNMEV RHSEPASSHR TVTEPRIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS  600
YYKCTFQGCN VRKHVERAAT DPKAVITTYE GKHKHDVPAS KSGSYAANNK ASNIGSGNQG  660
TQKHASVSRM DPRNNDQQPV ARLRLKEEQI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40408639878Probable WRKY transcription factor 4
2lex_A3e-40408639878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297269.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-157WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2P6R2R70.0A0A2P6R2R7_ROSCH; Putative transcription factor WRKY family
STRINGXP_004297269.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-138WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]