PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000093.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 1063aa MW: 119626 Da PI: 5.2347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000093.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1.1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l FANhyb_rscf00000093.1.g00003.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.1	2.7e-10	120	162	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l FANhyb_rscf00000093.1.g00003.1 120 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 162 7***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
SuperFamily	SSF46689	2.01E-13	4	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-17	5	59	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	8	53	IPR001005	SANT/Myb domain
CDD	cd00167	4.30E-12	10	53	No hit	No description
PROSITE profile	PS51294	15.184	113	166	IPR017930	Myb domain
SMART	SM00717	4.1E-11	117	164	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.8E-11	119	168	IPR009057	Homeodomain-like
CDD	cd11659	7.56E-28	119	165	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-10	120	163	IPR009057	Homeodomain-like
Pfam	PF13921	6.1E-9	121	170	No hit	No description
Pfam	PF11831	5.3E-57	460	689	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKI 60 AMCGLLGLGP CSVGVFGFDL VSVFVNFVRE VTVFVQFRCF AICVYYCLVD VCLLEKTETE 120 WTREEDEKLL HLAKLMPTQW RTIAPIVGRT PSQCLERYEK LLDAACVKDE NYEPGDDPRK 180 LRPGEIDPNP ESKPARPDPV DMDEDEKEML SEARARLANT RGKKAKRKAR EKQLEEARRL 240 ASLQKRRELK AAGIDTRQRK RKRKGIDYNA EIPFEKKPPP GFYDVAEEDR PVEQPQFPTT 300 IEELEGKRRV DVEAQLRKQD IAKNKIAQRQ DAPSAILQAN KLNDPETVRK RSKLMLPAPQ 360 ISDHELEEIA KMGYANDLAG SELTEGSGAT RALLANYAQT PRLGMTPLRT PQRTPSGKGD 420 AIMMEASNLA MLRESQTPLL GGENPQLHPS DFSGAGLTPR FGLTPSRDAL GMTPKGTPMR 480 DELRINEDVD MHDSAKMEHR RQAELRKNLQ LGLSNLPQPK NEYQIVMQPV PEDDEEPEEK 540 IEEDMSDRIA RERAEEEARQ QALLRKRSKV LQRELPRPPA TSVESLRKSL LRADEDKSKV 600 VPPTSIEQAN EMITKELLSL LEHDNAKYPL DEKTDKRKKK GSKRSTNGST SAVPEIDDFE 660 EDELKEADSM INYEVKYLRV AMGHEDKSVD EFVEVHKTCM NEFMFFPKRN AYGSSSIAGN 720 EEKLEALQNE FDNVKKKLDD DLAKAVSLEK KVKVRTHGYE IGGHSFSRSY GVILLSSFNE 780 DRPPNLKFFP GSLHLVDYDN SRDLSSGVLR TWIVPGPLCT SFLSAMQMRA KDTHWPKIEE 840 TFKQLDTAEK ELECFRALQK QEQLAASHRI NNLWEEVQKQ KELERTLQKR YGGLLLEVER 900 VQHLREKYIA QEQEQKEVAA RNDLELADAA VDVTVAQSTV NLDSTSASDE LAASHGETTD 960 PQVDGMDVDA DKKDDMTVTT DVDVPKNTPS AAEGEKDIPS QGTSGEGSET HLSTSDGIPS 1020 SDVAAQESVS NGDAVSGSVA KVLPTENLTR TTVADDQVVG AEI

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKI  60
AMCGLLGLGP CSVGVFGFDL VSVFVNFVRE VTVFVQFRCF AICVYYCLVD VCLLEKTETE  120
WTREEDEKLL HLAKLMPTQW RTIAPIVGRT PSQCLERYEK LLDAACVKDE NYEPGDDPRK  180
LRPGEIDPNP ESKPARPDPV DMDEDEKEML SEARARLANT RGKKAKRKAR EKQLEEARRL  240
ASLQKRRELK AAGIDTRQRK RKRKGIDYNA EIPFEKKPPP GFYDVAEEDR PVEQPQFPTT  300
IEELEGKRRV DVEAQLRKQD IAKNKIAQRQ DAPSAILQAN KLNDPETVRK RSKLMLPAPQ  360
ISDHELEEIA KMGYANDLAG SELTEGSGAT RALLANYAQT PRLGMTPLRT PQRTPSGKGD  420
AIMMEASNLA MLRESQTPLL GGENPQLHPS DFSGAGLTPR FGLTPSRDAL GMTPKGTPMR  480
DELRINEDVD MHDSAKMEHR RQAELRKNLQ LGLSNLPQPK NEYQIVMQPV PEDDEEPEEK  540
IEEDMSDRIA RERAEEEARQ QALLRKRSKV LQRELPRPPA TSVESLRKSL LRADEDKSKV  600
VPPTSIEQAN EMITKELLSL LEHDNAKYPL DEKTDKRKKK GSKRSTNGST SAVPEIDDFE  660
EDELKEADSM INYEVKYLRV AMGHEDKSVD EFVEVHKTCM NEFMFFPKRN AYGSSSIAGN  720
EEKLEALQNE FDNVKKKLDD DLAKAVSLEK KVKVRTHGYE IGGHSFSRSY GVILLSSFNE  780
DRPPNLKFFP GSLHLVDYDN SRDLSSGVLR TWIVPGPLCT SFLSAMQMRA KDTHWPKIEE  840
TFKQLDTAEK ELECFRALQK QEQLAASHRI NNLWEEVQKQ KELERTLQKR YGGLLLEVER  900
VQHLREKYIA QEQEQKEVAA RNDLELADAA VDVTVAQSTV NLDSTSASDE LAASHGETTD  960
PQVDGMDVDA DKKDDMTVTT DVDVPKNTPS AAEGEKDIPS QGTSGEGSET HLSTSDGIPS  1020
SDVAAQESVS NGDAVSGSVA KVLPTENLTR TTVADDQVVG AEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
5xjc_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
5yzg_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
5z56_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
5z57_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
5z58_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6ff4_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6ff7_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6icz_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6id0_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6id1_L	1e-150	2	902	3	799	Cell division cycle 5-like protein
6qdv_O	1e-150	2	902	3	799	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	263	KRRELKAAGIDTRQRKRKRK
2	258	263	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024188745.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2P6R5K1	0.0	A0A2P6R5K1_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004302089.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]