PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000082.1.g00020.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 956aa    MW: 106614 Da    PI: 6.8315
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000082.1.g00020.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-24152253199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a+
  FANhyb_rscf00000082.1.g00020.1 152 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 228
                                     99*****************************8544444..48************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD+v+F   ++++ +l+++++r+
  FANhyb_rscf00000082.1.g00020.1 229 RLVAGDSVLFI--WNEKNQLLLGIRRA 253
                                     ***********..8899999****997 PP
2Auxin_resp116.81.8e-38278361183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSk 78 
                                     aahaast+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+
  FANhyb_rscf00000082.1.g00020.1 278 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTHISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSH 356
                                     79*********************************97789*************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wrs+k
  FANhyb_rscf00000082.1.g00020.1 357 WRSVK 361
                                     **985 PP
3Auxin_resp26.33.2e-103834125483
                      Auxin_resp  54 sserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                        ++++Gt++g+sdld  rWpnS+Wrs+k
  FANhyb_rscf00000082.1.g00020.1 383 IFFISYMGTITGISDLDAARWPNSHWRSVK 412
                                     556899*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48137281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-42145267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-21151252No hitNo description
SMARTSM010192.0E-24152254IPR003340B3 DNA binding domain
PfamPF023623.9E-22152253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548152254IPR003340B3 DNA binding domain
PfamPF065076.8E-34278361IPR010525Auxin response factor
PfamPF065075.7E-6386412IPR010525Auxin response factor
SuperFamilySSF542771.96E-7815897No hitNo description
PROSITE profilePS5174522.445822906IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MNVKLPDFCK VVHQVIVIKY FLIHCKMRLS SAGFSPQPQD GEKRVLNSEL WHACAGPLVC  60
LPAVGSRVVY FPQGHSEQVT ASTNMEVDSH IPNHPSLPPQ LICQLHNRDD AYVETDEVYA  120
QMTLQPLNPQ EQKDGYLPAG LGSPNKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP  180
LDFSQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW  240
NEKNQLLLGI RRANRPQTVM PSSVLSSDSM HLGLLAAAAH AASTNSRFTI FYNPRASPSE  300
FVIPLAKYIK AVYHTHISVG MRFRMLFETE ESSVRRYMGT ITGISDLDAA RWPNSHWRSV  360
KLLTSGCSKR EVHVLLHWLI SDIFFISYMG TITGISDLDA ARWPNSHWRS VKVGWDESTA  420
GERQPRVSLW EIEPLTTFPM YPSSFPLRLK RPWPPGLPSY NGLREDDHNM NSPLLWLRGD  480
TGDRGIQSLN YHGIGVTPWM QPRFDASMIG LQTDMYQAMA AAALQEMRGV DPSKLLPTSL  540
LQFQQTQNLS SRSAALMQPQ MVQESQSQQA FLQGVEEIHR QSHSQTPTQL HLQHQLQHQN  600
SFSNQQQQIL DHQQIPSAIS SMNQFASASQ SRSPSFQVIT SLCQQQSFPD SNGNSATSTT  660
LSPLSSLMGS FSQDESSNLL NVPRTNPLLS SSGWPSKRAA IEPLLSSGVS QCVLPQVEQL  720
GPPQTTISHS PISLPPFPGR ECSIDQEGST DPQTHLLFGI NMSNLRAVGS DSVSTTIHFP  780
SNYMSTTETD FSLNPAVTPN CIDESGFLQS PENVGHENQP NGNFVKVYKS GSYGRSLDIT  840
KFSSYHELRS ELARMFGLDG ELEDPVRSGW QLVFVDREND VLLLGDDPWP EFVNSVWCIK  900
ILSPQEVQQM GKRGLELLKS VPMQRLSSNS CDDYGGSRQD SRNLSSGITS VGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1453937443382Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293501.10.0PREDICTED: auxin response factor 6
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2P6Q5V30.0A0A2P6Q5V3_ROSCH; Auxin response factor
STRINGXP_004293501.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]