PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000080.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 523aa    MW: 59041 Da    PI: 5.8617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000080.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.72.2e-451733181149
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l+++L++cA+a+s++d+  a ++++ l +++s +g+pmqRl ay++e+L+arl +s+s +yk+l+++  +   s+e ++
  FANhyb_rscf00000080.1.g00010.1 173 LKNVLIHCAHAISEEDMYTAANCMEVLGHMVSVSGEPMQRLGAYMLEGLKARLEKSGSMIYKTLKCEVPT---SEELMT 248
                                     5789****************************************************************99...899999 PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                                     +++++++++P+ kf++l  N  I +a+ +e rvHiiDf+i qG QW++L+q La++p+gpp +RiT v++
  FANhyb_rscf00000080.1.g00010.1 249 YMSILYQICPYWKFAYLSSNVIIRQALLNEPRVHIIDFQIAQGSQWIPLIQDLACQPGGPPLIRITEVAA 318
                                     9999**************************************************************9875 PP
2GRAS232.12.5e-71315520167374
                            GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                     ++A++ +vpfefn+ +a +  +++le+Lr++pgEa+aV + + lh+++desvs+e++rd++L+lv+slsPkv+++veqe
  FANhyb_rscf00000080.1.g00010.1 315 EVAAKYNVPFEFNA-AAMSGCEVDLENLRIQPGEAIAVTFPYVLHHMPDESVSTENHRDRLLRLVRSLSPKVMTLVEQE 392
                                     78************.89999*********************************************************** PP

                            GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                     +++n++sF  rf+e+++yy+a+f+s++a+ pr++++ri+ E ++++r+ivn++ace aer+erhe l+kWr+rl++ GF
  FANhyb_rscf00000080.1.g00010.1 393 SNTNTSSFYSRFVESVDYYTAMFESIDAGCPRDNKQRISAEMHCVARDIVNMIACEDAERVERHELLGKWRSRLMMDGF 471
                                     ******************************************************************************* PP

                            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     +p p++     +++ ll+ ++++ yrvee +g+l+lgWk+r+Lv+ SaWr
  FANhyb_rscf00000080.1.g00010.1 472 TPCPFGPAGIGEIRNLLKDYNEN-YRVEEVDGALYLGWKKRALVTSSAWR 520
                                     *********************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.195147501IPR005202Transcription factor GRAS
PfamPF035148.6E-69315520IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MQTSQQHRNT AIHMLHHQPM KKIDPYSSPH FQILENSVCP DTGSQGKNVS FQTYKEEFFT  60
LESTPVNDGF IACDSPSAVS GLSNRSPFSP QGSHSYSSDH HHHHFSDTTS GSPVSGCSGV  120
DDGNDLKYKL RELEVSLLGP ESDIVDSHYC CYKSDMPRWS EKEIAEMIPK LNLKNVLIHC  180
AHAISEEDMY TAANCMEVLG HMVSVSGEPM QRLGAYMLEG LKARLEKSGS MIYKTLKCEV  240
PTSEELMTYM SILYQICPYW KFAYLSSNVI IRQALLNEPR VHIIDFQIAQ GSQWIPLIQD  300
LACQPGGPPL IRITEVAAKY NVPFEFNAAA MSGCEVDLEN LRIQPGEAIA VTFPYVLHHM  360
PDESVSTENH RDRLLRLVRS LSPKVMTLVE QESNTNTSSF YSRFVESVDY YTAMFESIDA  420
GCPRDNKQRI SAEMHCVARD IVNMIACEDA ERVERHELLG KWRSRLMMDG FTPCPFGPAG  480
IGEIRNLLKD YNENYRVEEV DGALYLGWKK RALVTSSAWR CAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-461775208375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293381.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_011460052.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2P6Q2190.0A0A2P6Q219_ROSCH; Putative transcription factor GRAS family
STRINGXP_004293381.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-177SCARECROW-like 13