PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000076.1.g00014.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 87aa    MW: 10127.7 Da    PI: 10.0427
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000076.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.62.9e-322979151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++
  FANhyb_rscf00000076.1.g00014.1 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 79
                                    79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3612181IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-402180IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-302284IPR002100Transcription factor, MADS-box
CDDcd002651.18E-392285No hitNo description
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-332343IPR002100Transcription factor, MADS-box
PfamPF003192.3E-273077IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-334358IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-335879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MEFPKQITPA DDPESSSQKK LGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFST RGRLYEYANN RVMRIEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-212185165Myocyte-specific enhancer factor 2B
1tqe_Q2e-212185165Myocyte-specific enhancer factor 2B
1tqe_R2e-212185165Myocyte-specific enhancer factor 2B
1tqe_S2e-212185165Myocyte-specific enhancer factor 2B
6c9l_A2e-212185165Myocyte-specific enhancer factor 2B
6c9l_B2e-212185165Myocyte-specific enhancer factor 2B
6c9l_C2e-212185165Myocyte-specific enhancer factor 2B
6c9l_D2e-212185165Myocyte-specific enhancer factor 2B
6c9l_E2e-212185165Myocyte-specific enhancer factor 2B
6c9l_F2e-212185165Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024182869.15e-53floral homeotic protein AGAMOUS isoform X4
SwissprotQ408857e-40AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A2P6S0261e-51A0A2P6S026_ROSCH; Putative transcription factor MADS-MIKC family
TrEMBLQ9MBE21e-51Q9MBE2_ROSRU; MADS-box protein
STRINGXP_004309724.14e-51(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.27e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]