PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000073.1.g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SRS | ||||||||
Protein Properties | Length: 370aa MW: 39249.1 Da PI: 7.5433 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218 | 2e-67 | 130 | 289 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrk 75 t+sCqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpa+krrerqqq+ +a +++++++ +++kr FANhyb_rscf00000073.1.g00015.1 130 STVSCQDCGNQAKKDCVHMRCRTCCKSRGFECATHVKSTWVPASKRRERQQQHLTALQQQQQHEtvqvirgGGENPKRL 208 5789*********************************************887766655555555589998867777888 PP DUF702 76 relkskkqsalsstk..lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 re++ ++ s+ ss + ++++ le ++P+e+ s+a+frcvrvss+dd+e+++aYqtav+i+GhvfkGiLy+qG+ FANhyb_rscf00000073.1.g00015.1 209 RESNPNNPSSNSSLGacTRIITNTSGLELGNFPPELTSPALFRCVRVSSIDDDEDQYAYQTAVNIAGHVFKGILYNQGP 287 8775555554443321133344556788889***********************************************9 PP DUF702 153 ee 154 ++ FANhyb_rscf00000073.1.g00015.1 288 AD 289 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.1E-66 | 131 | 288 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.1E-27 | 133 | 175 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.8E-27 | 240 | 287 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MAGFFSLGGG GSRNPESRNQ YQQPQPSDIP PETLFWYKNN EEGMPNKGSF ELWQHQQQQL 60 QHHHHQQQQH QLHQLQLQQD LYASAAALGV GPSSINVSDE SSSRPFMLMR PSSSGGGGGG 120 GGGGGSTSGS TVSCQDCGNQ AKKDCVHMRC RTCCKSRGFE CATHVKSTWV PASKRRERQQ 180 QHLTALQQQQ QHETVQVIRG GGENPKRLRE SNPNNPSSNS SLGACTRIIT NTSGLELGNF 240 PPELTSPALF RCVRVSSIDD DEDQYAYQTA VNIAGHVFKG ILYNQGPADN NNYNMSTGGE 300 SSSGGGGGGG GGGGVIQPLN LINAAPTTAV SGGVTVAAAS GSGTLMDPNS LYPANPFMAS 360 GTQFFLPPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 125 | SGGGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462565.1 | 0.0 | PREDICTED: protein SHORT INTERNODES-like | ||||
Swissprot | Q9XGX0 | 1e-87 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2P6RM30 | 1e-158 | A0A2P6RM30_ROSCH; Putative transcription factor STY-LRP1 family | ||||
STRING | XP_004289107.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 9e-75 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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