PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000073.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 670aa    MW: 77190.8 Da    PI: 6.2482
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000073.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.7e-2240125290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                      Yn+YA + GFs+rk k ++  +n+   +r++ Cskeg++ +e+   e ++ +r  trtgCka+++ + e dgkw++ +
  FANhyb_rscf00000073.1.g00003.1  40 LYNTYAFKKGFSIRKGKVRRDAQNK-LRQRDYFCSKEGFPLDEEVG-EAKKVRRLDTRTGCKAMVRFNVE-DGKWRIVQ 115
                                     7*******************96666.****************9999.99999*****************9.******** PP

                            FAR1  81 leleHnHela 90 
                                     ++  HnHe+a
  FANhyb_rscf00000073.1.g00003.1 116 FNPVHNHEFA 125
                                     *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2040125IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31252346IPR018289MULE transposase domain
PROSITE profilePS5096610.089531567IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-5540566IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-4542569IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MDSGWQRNVL ENGDKEDTFG DGDELRVGTV VENENEAYEL YNTYAFKKGF SIRKGKVRRD  60
AQNKLRQRDY FCSKEGFPLD EEVGEAKKVR RLDTRTGCKA MVRFNVEDGK WRIVQFNPVH  120
NHEFAKPEER QFLRSSRHIS TVRAAIIGYN SSKVDASVRP TKTLSYLEKE MSSTDNAGFG  180
FTEKGVHDCL HRLQENMIGG ADGQSLLDYL KHQQLEDSSF FYSVKVDQYN RVTNFFWRDS  240
RSRLDYDCFG DVVLFDTTFR TKKYNLVCAP FVGVDHHWKN VLFGCAFLLD ESTDSFTWLF  300
ENFLESMGDK RPKTIFTDED NAMAKAIEVI LPGTHHRLCT WNISKNASQY LASHLANPEF  360
KECFNKCFHE CVAEAEFEAT WDDMVKKFNL ENDLWLKKLY LLRQKWSPAF SPDTFTANIG  420
CDQRGENIDT TFHQISTTTM DLIGLAQHYE KKTKVLRLAQ AEEDFRCKNG MPRLRVNTGI  480
FKHAAAEYTI KLYSFFENEI LSTFGVRMME VGNDGYQYVY EAVEEGHQRV YIIQYNSTTS  540
TICCSCKLFE SMGVLCRHAL KVLDLKNITS IPAQYIVKRW TRGAKNQDVM SSGLCEPSCE  600
RANSAQSLRL SELMQEGNNV FSIGSLCDSG TRIVKQNWFK RTDEQEAHED SVEVDEGEAE  660
AQTNMQPCRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259RKGKVRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289113.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2P6RM480.0A0A2P6RM48_ROSCH; Putative transcription factor FAR family
STRINGXP_004289113.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5