PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000071.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21025 Da    PI: 9.7911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000071.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66.1e-27959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii++s+gk+ +y+s
  FANhyb_rscf00000071.1.g00010.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIIASSGKMVDYCS 59
                                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32287IPR002100Transcription factor, MADS-box
CDDcd002651.33E-36281No hitNo description
PRINTSPR004048.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.4E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIIAS SGKMVDYCSG  60
PPETLKKILD KYHSQSGKRL WDAKHEDICS TASGFSLSLA KISDSEDVPP FSTGRLRRRS  120
VSIRADSSGV PDHFLFPASP PNSSFLARSI LCEVLSGGCC PDLQINLTEE SAWVEARLNQ  180
NRPVKNGGTS SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16176173MEF2 CHIMERA
6byy_B2e-16176173MEF2 CHIMERA
6byy_C2e-16176173MEF2 CHIMERA
6byy_D2e-16176173MEF2 CHIMERA
6bz1_A2e-16176173MEF2 CHIMERA
6bz1_B2e-16176173MEF2 CHIMERA
6bz1_C2e-16176173MEF2 CHIMERA
6bz1_D2e-16176173MEF2 CHIMERA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-41MIKC_MADS family protein