PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000061.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family E2F/DP
Protein Properties Length: 276aa    MW: 31058.3 Da    PI: 5.3558
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000061.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP59.17.2e-1922842971
                         E2F_TDP 29 evakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                                    +va+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  FANhyb_rscf00000061.1.g00015.1 22 NVADELVAEfsdpingvaspdqnlisqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 84
                                    799***************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.4E-14284IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094041.2E-9519276IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-272189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.7E-162184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.25E-123985IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.84E-4389192IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-4190200No hitNo description
SMARTSM011381.7E-6191274IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-4092203IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRIYLSALMG MILSQCFSVA RNVADELVAE FSDPINGVAS PDQNLISQQQ YDEKNIRRRV  60
YDALNVLMAM DIISKDKKEI QWKGLPRTSL NDIEELKTER LGLRSRIEKK AVYLQELEEQ  120
YVGLQNLIQR NEQLYCSGDA PSGGVSLPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF  180
ELHDDNYVLK AMKFCDRPQA DGNHGMTQPV TPQADGNHGM TQNYVADGGE GSSMSAMYQQ  240
HIPPQIPLPP MVNTPLRTPT SPPLPGIIKA RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-2023893493PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470129.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-104DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2P6SPV31e-156A0A2P6SPV3_ROSCH; Putative transcription factor E2F-DP family
STRINGXP_004307868.11e-158(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-107Transcription factor DP