PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000059.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 662aa    MW: 72998.3 Da    PI: 6.8706
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000059.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32254308155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     +pr+rWtpeLHe+Fveav++L G+ekAtPk++l++m+++gLt++hvkSHLQkYRl
  FANhyb_rscf00000059.1.g00001.1 254 RPRMRWTPELHEHFVEAVKKLDGAEKATPKAVLKVMNIEGLTIYHVKSHLQKYRL 308
                                     59****************************************************8 PP
2G2-like102.13.4e-32382436155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     +pr+rWtpeLHerFv+ v++L G+ekAtPk++l++m+v+gLt++hvkSHLQkYRl
  FANhyb_rscf00000059.1.g00001.1 382 RPRMRWTPELHERFVDSVKKLDGAEKATPKAVLKVMNVEGLTIYHVKSHLQKYRL 436
                                     59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.962251311IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-30253309IPR009057Homeodomain-like
SuperFamilySSF466894.66E-17253308IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24255309IPR006447Myb domain, plants
PfamPF002493.8E-9256307IPR001005SANT/Myb domain
PROSITE profilePS512949.144379439IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-30381437IPR009057Homeodomain-like
SuperFamilySSF466891.16E-16381436IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-24383437IPR006447Myb domain, plants
PfamPF002494.3E-8384435IPR001005SANT/Myb domain
PfamPF143794.0E-23482529IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKVGLSSAIM SLHGVSSVTQ SETTKGIAQS YCTSLSPVHD FLGCESEGRN SVHECSSTRL  60
SPFMRTESFS SPTNMRESSL QHVKSTFSRS SVFCTSLYQS SSSTSETSRQ LGNLPFLPHP  120
PTYSQSNSAV DSTSPLLLSQ DMSNQYDDGQ SDYLMKDFLN MTGDASDGSF HEIGCGSDTM  180
ALTEQLEFQF LSDQLDIAIT DNGENPRLDE IYDIPQASSE PTIELTCSKS CGSTAPLVDA  240
LSSHPSPGPS SAHRPRMRWT PELHEHFVEA VKKLDGAEKA TPKAVLKVMN IEGLTIYHVK  300
SHLQKYRLAK YMPEKKEVII DLMVISIIPN SASILLHEIY DIPQASSEPT IELTCSKSCG  360
STAPLVDALS SHPSPGPSSA HRPRMRWTPE LHERFVDSVK KLDGAEKATP KAVLKVMNVE  420
GLTIYHVKSH LQKYRLAKYM PEKKEDKKAS SSEEKKAASS GNESDGRRKG VEKLDLSSRR  480
SIHITEALRM QMEVQKQLHE QLEVQRSLQL RIEEHAKYLE KILEEQQKAG SALLSPQALS  540
SLTTNSLKDS EQQPPPSACI SASQPAVSDS SSPLSLKHKA ADCSDSEAQA YTKKLRIEEK  600
PDDPVVENPS ATGPKVGFVK LNLDRANDKR SVKHTILWYR MKQSVPGALL AGSLHWQSQF  660
YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24254439259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467504.10.0PREDICTED: protein PHR1-LIKE 1
RefseqXP_011467505.10.0PREDICTED: protein PHR1-LIKE 1
SwissprotQ949U21e-102PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A2P6RZF10.0A0A2P6RZF1_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004303787.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.25e-88G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]