PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000056.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 339aa    MW: 38118.8 Da    PI: 6.9857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000056.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171360148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg W++eEd++l++ v+ +G g+W+++++  g+ R++k+c++rw +yl
  FANhyb_rscf00000056.1.g00007.1 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPKNAGLERCGKSCRLRWINYL 60
                                    788*******************************************97 PP
2Myb_DNA-binding55.81e-1766109146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  FANhyb_rscf00000056.1.g00007.1  66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25563IPR009057Homeodomain-like
PROSITE profilePS5129418.118860IPR017930Myb domain
SuperFamilySSF466899.36E-3011107IPR009057Homeodomain-like
SMARTSM007171.3E-131262IPR001005SANT/Myb domain
PfamPF002498.3E-161360IPR001005SANT/Myb domain
CDDcd001672.52E-111660No hitNo description
PROSITE profilePS5129426.51761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2664115IPR009057Homeodomain-like
SMARTSM007172.7E-1665113IPR001005SANT/Myb domain
PfamPF002498.9E-1666109IPR001005SANT/Myb domain
CDDcd001673.36E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP KNAGLERCGK SCRLRWINYL  60
RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLISS HKRSVASNKI AGSNAKTQSH IDQERPVFTV NNMSQKTDSS TEINYSMSTP  180
IVPLLNAQPP TVQYMMAPPT DNNHYRVQNP NSGWNNVSDI PTFPDSTLNM SSASSSSVFG  240
HMDDSNCIWA AGAEAYVPAP GAMEVQGEQS KGQVVQVQQE KEKLLEMEME AMQDMEITAS  300
FDQCSSFDYS LVEYYSTMMS GVAPRDHVNY SVADFTWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293853.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A2P6Q8050.0A0A2P6Q805_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004293853.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-89myb domain protein 67