PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000052.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 422aa    MW: 47021.9 Da    PI: 6.6625
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000052.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-093453821954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  FANhyb_rscf00000052.1.g00016.1 345 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 382
                                     564459******************************88 PP
2BELL99.23.2e-32207277272
                            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     ++e q+k++ L++lleeV++r ++y++q++ v+ sFe+v+g g+ak+Yt+lAlka+SrhF +L+dai+++i
  FANhyb_rscf00000052.1.g00016.1 207 KHEFQAKITNLITLLEEVEDRCERYYHQMEEVMQSFEMVVGAGAAKSYTALALKAMSRHFGSLRDAIMSHI 277
                                     789*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-33137275IPR006563POX domain
PfamPF075269.3E-41142274IPR006563POX domain
CDDcd000861.06E-11326387No hitNo description
SMARTSM003892.1E-9326390IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-27331392IPR009057Homeodomain-like
SuperFamilySSF466891.92E-17332394IPR009057Homeodomain-like
PfamPF059202.8E-17343382IPR008422Homeobox KN domain
PROSITE profilePS5007111.855345386IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MVSQDSPPNQ ASGILHQFIV SDSMAAQHHM ENQHQLDAAY SNFRTSTSTY PGQLPSIHSL  60
EERMSRSLDL LHAPPTAEGS DHMSHTRLLM DQHQALSLSL GSQMLLPHNS HSAHYVSDDY  120
SFMGNALASS SNSLNQQSLG AVIGNSRYLK PAQSLLEEIV SVGGKSVDIS TEKHVGKMYG  180
GGRRGSMSLS SELKAELCCN GLMSADKHEF QAKITNLITL LEEVEDRCER YYHQMEEVMQ  240
SFEMVVGAGA AKSYTALALK AMSRHFGSLR DAIMSHINAE KRKLMQDFPK VSSGLAQLSL  300
HDRECRQKRM SLQQLGIIHG QRQGAWRPIR GLPETSVAIL RTWLFEHFLH PYPNDSEKLM  360
LASQTGLSKN QVSNWFINAR VRLWKPMIEE MYKEEFADSS QDSNPVASGS MTGESNTDHT  420
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16332389158Homeobox protein Meis1
4xrs_B7e-16332389158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291836.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-108BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P6PYU50.0A0A2P6PYU5_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291835.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11