PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000048.1.g00019.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CPP

Protein Properties

Length: 953aa MW: 104577 Da PI: 6.8239

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000048.1.g00019.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.4	1.6e-14	528	566	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cf+ag +C+ +C C++C+Nk e FANhyb_rscf00000048.1.g00019.1 528 CKRCNCKKTKCLKLYCDCFSAGIYCDTTCACQECFNKPE 566 79**********************************976 PP
2	TCR	48.6	1.6e-15	605	643	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+C+N FANhyb_rscf00000048.1.g00019.1 605 RHKRGCNCKKSMCLKKYCECYQANVGCSNGCRCEGCQNA 643 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.7E-13	526	567	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.871	527	645	IPR005172	CRC domain
Pfam	PF03638	1.0E-10	529	564	IPR005172	CRC domain
SMART	SM01114	7.0E-17	605	646	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.9E-11	607	643	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MDSPDFTKSR PTASPSSHSP PVHESPVFSY INNLSPIKTV KATHIAPGFP GLSSPPLVFT 60 SPRVNPYSET SFLKRSEKSA ILIRQSQQSE LSGAGIPKAH DKGPVDPVKP LTQLRLGFIT 120 DTRDCKTKNC VETHECSSSE FVDEFLADSA DVDCVNSDQS LNPCLEHSSS VLEQSGNDLI 180 KSNELTLTLG NRNDDATNST TEPQAPFMIS EQAHEYIQGK QTSIAKSTRN EKQRNDELSF 240 NEYRNIDTGL SVNNAFRREY HQDLHDRVLR GEHQDDYGYS PQSLAGALHI GHVYEDDEAG 300 SIPNRLVENA VMHASKESNN QCGMQRRCLR FEEAPRTSGK VDDSLSFSEK VSNSEPPTST 360 IETEMVGSSF VDLSATCMKR QTEDSLPARS TGKPRLSVSK PSSIGLHLNS IVNAASLVHG 420 ATTIKLADCN MGVQVMKSAS ISVRRCPNLL NMVEKDSAGA VDWRNETESS VAASSATTQS 480 PHSMEFEHHG SIHEIRISDS HSIDSYEECN QLSSNKKRKR APRNSDGCKR CNCKKTKCLK 540 LYCDCFSAGI YCDTTCACQE CFNKPEYEDT VLETRQIIES RNPLAFAPKV VEREDENQFT 600 PASARHKRGC NCKKSMCLKK YCECYQANVG CSNGCRCEGC QNAYGKRGEF VDVDSGVAGE 660 VISDKDGTET RESAFDEKLQ RVATRKDSND SPNFTPFTPS LQCFDDNYNI TKSRVLPAIC 720 HPSPQSALTV ISHYEKSTRS PQRNSENSDN CMDTSKGLLD VTSYDRRGDY ESIGTLETTS 780 PRCYAVPTTC HLTPLSGPGS LAITSSASST TSDLRNASQV QLHPGSHCIL SGSSLHWRSS 840 PVTPMHQFGG LKSFQGFDSE KGHHDILQDD TPQILKDTSI PIKSVKVSSP NKKRVSPPHS 900 HIHELGTSSS GALRSGRKFI LRAVPSFPPL TPCISSKGSS TIQNMGNPLQ DKD

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MDSPDFTKSR PTASPSSHSP PVHESPVFSY INNLSPIKTV KATHIAPGFP GLSSPPLVFT  60
SPRVNPYSET SFLKRSEKSA ILIRQSQQSE LSGAGIPKAH DKGPVDPVKP LTQLRLGFIT  120
DTRDCKTKNC VETHECSSSE FVDEFLADSA DVDCVNSDQS LNPCLEHSSS VLEQSGNDLI  180
KSNELTLTLG NRNDDATNST TEPQAPFMIS EQAHEYIQGK QTSIAKSTRN EKQRNDELSF  240
NEYRNIDTGL SVNNAFRREY HQDLHDRVLR GEHQDDYGYS PQSLAGALHI GHVYEDDEAG  300
SIPNRLVENA VMHASKESNN QCGMQRRCLR FEEAPRTSGK VDDSLSFSEK VSNSEPPTST  360
IETEMVGSSF VDLSATCMKR QTEDSLPARS TGKPRLSVSK PSSIGLHLNS IVNAASLVHG  420
ATTIKLADCN MGVQVMKSAS ISVRRCPNLL NMVEKDSAGA VDWRNETESS VAASSATTQS  480
PHSMEFEHHG SIHEIRISDS HSIDSYEECN QLSSNKKRKR APRNSDGCKR CNCKKTKCLK  540
LYCDCFSAGI YCDTTCACQE CFNKPEYEDT VLETRQIIES RNPLAFAPKV VEREDENQFT  600
PASARHKRGC NCKKSMCLKK YCECYQANVG CSNGCRCEGC QNAYGKRGEF VDVDSGVAGE  660
VISDKDGTET RESAFDEKLQ RVATRKDSND SPNFTPFTPS LQCFDDNYNI TKSRVLPAIC  720
HPSPQSALTV ISHYEKSTRS PQRNSENSDN CMDTSKGLLD VTSYDRRGDY ESIGTLETTS  780
PRCYAVPTTC HLTPLSGPGS LAITSSASST TSDLRNASQV QLHPGSHCIL SGSSLHWRSS  840
PVTPMHQFGG LKSFQGFDSE KGHHDILQDD TPQILKDTSI PIKSVKVSSP NKKRVSPPHS  900
HIHELGTSSS GALRSGRKFI LRAVPSFPPL TPCISSKGSS TIQNMGNPLQ DKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	529	642	12	120	Protein lin-54 homolog
5fd3_B	1e-17	529	642	12	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459206.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A2P6PY00	0.0	A0A2P6PY00_ROSCH; Putative transcription factor Tesmin family
STRING	XP_008229954.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-56	TESMIN/TSO1-like CXC 2