PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000044.1.g00022.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ZF-HD

Protein Properties

Length: 331aa MW: 36397.4 Da PI: 9.8312

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000044.1.g00022.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	110	166	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eClkNhAa++Ggh++DGCgEfmps gee ++ +lkCaAC+CHRnFHR+e e FANhyb_rscf00000044.1.g00022.1 110 KAVRYRECLKNHAATTGGHVLDGCGEFMPS-GEEDSPGGLKCAACDCHRNFHRKEIEG 166 579************************9.8888*****************9876 PP
2	Homeobox	16.5	1.4e-05	268	328	1	57
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt+f++eq + + e+ e + ++ +++e ++L ++lg++ ++ kvW +N ++ +kk FANhyb_rscf00000044.1.g00022.1 268 KRFRTKFSQEQKDKMMEVAEklgwRIQKHDEHEVQQLCSELGVKRQVFKVWMHNNKQAMKK 328 789**********99999676668999**************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-21	111	167	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.7E-29	112	164	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-29	113	164	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.995	114	163	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.55E-19	256	328	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-29	258	329	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.264	265	329	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	1.4E-26	267	324	IPR006455	Homeodomain, ZF-HD class
CDD	cd00086	0.0019	268	330	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MKSARVWERT NVTLSALLQR PVPPLLSLPP PFLLKLNIII IIISLSSRIH TNPEILTQVP 60 NPDPNLSPAA VCTTPRATSS TPRGANHSFK AAPSAAQAQV PVPEPVPASK AVRYRECLKN 120 HAATTGGHVL DGCGEFMPSG EEDSPGGLKC AACDCHRNFH RKEIEGEPQL VHVPNNYHVL 180 NHPNKNSHSS RRNASSAPVV PSLPAPPPVH HHHQYHHFPA TSPTVAGSFP PGSMMTFGGG 240 GGAAESSSED LNHMNMYDQS NQAGSSRKRF RTKFSQEQKD KMMEVAEKLG WRIQKHDEHE 300 VQQLCSELGV KRQVFKVWMH NNKQAMKKKQ L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-24	266	325	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004287891.1	0.0	PREDICTED: zinc-finger homeodomain protein 6-like
Swissprot	Q9ZPW7	1e-60	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A2P6RMD6	1e-140	A0A2P6RMD6_ROSCH; Putative transcription factor ZF-HD family
STRING	XP_004287891.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-26	homeobox protein 22