PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000041.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 101aa    MW: 11483.1 Da    PI: 4.8099
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000041.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.72.2e-252583260
                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                                    Flkk ye+++dee++++iswse+++sfv++d ++f+  +LpkyFkhsnf+SF+RQLn+Y
  FANhyb_rscf00000041.1.g00023.1 25 FLKKCYEMVDDEETDSIISWSESNDSFVIKDVTQFSVMMLPKYFKHSNFSSFMRQLNIY 83
                                    9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-261683IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-222184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-162195IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-212583IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-152548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-156375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-157688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MVRKSKEKEK TGEGSSSADA SVAPFLKKCY EMVDDEETDS IISWSESNDS FVIKDVTQFS  60
VMMLPKYFKH SNFSSFMRQL NIYVSISFGF CIAFLEVVCG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1814831787Heat shock factor protein 1
5d5v_B3e-1814831787Heat shock factor protein 1
5d5v_D3e-1814831787Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297421.12e-50PREDICTED: heat stress transcription factor A-8 isoform X1
SwissprotQ9S7U51e-26HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A2P6R3N33e-44A0A2P6R3N3_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004297421.18e-50(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.12e-29heat shock transcription factor A8