PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000040.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 603aa    MW: 63692.9 Da    PI: 8.649
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000040.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.92e-13117156242
                             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  FANhyb_rscf00000040.1.g00023.1 117 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 156
                                     89**************************.********9875 PP
2TCR512.8e-16201240140
                             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  FANhyb_rscf00000040.1.g00023.1 201 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 240
                                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15116156IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.314117241IPR005172CRC domain
PfamPF036384.3E-10118153IPR005172CRC domain
SMARTSM011143.5E-20201242IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-13204239IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGEGDGADSA PKKPQSDAAP VVATTSSSSG EVPAKKLARQ LDFTGFGATS GSVPPKPQVP  60
PVVTTVPPQS QPRPQVMGLP VPPPQLHLPS VRPPVKPDSP KARPRPIVDG KDGTPKKQKQ  120
CNCKHSRCLK LYCECFASGI YCDGCNCVNC CNNVENEGAR RDAVEATLER NPNAFRPKIA  180
SSPHGPRDSR EEAGELVVLA KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNFE  240
GSEERQALFH GDHANNMAYI QHAANAAITG AIGSSGYLSS PMVSKKRKGQ ELFFGQTVKD  300
PSAHRIGQYP QANHLRPPAP SSSSVPVARH EQRNAAEKQA EASLVTTTED RLQSQKESDT  360
QKAVTDDCST ANQADKISPE DSNSDGVDGP KGRPMSPGTL ALMCDEQDTM FMSAASPNGL  420
MGDGCDTSSQ LPNGHGMTEV YAEQERIVLA KFRGCLNMLI TRGELKGKST LFLTSGSRKA  480
ECASLARSEA AAQREQIGNG TTNPRMETGS RQGTISNGVA KTAVPPTART SQMVSAAVLP  540
TARTSQMVSA AVPPTARTSQ MVTAAVPPTA RTSQMVSVAV SAPTTVPPKP PSVPGNGGNK  600
PKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-351122505132Protein lin-54 homolog
5fd3_B9e-351122505132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470497.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-168TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P6RJE40.0A0A2P6RJE4_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004288832.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.21e-151Tesmin/TSO1-like CXC domain-containing protein