PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000038.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 407aa    MW: 47518.3 Da    PI: 6.4195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000038.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111050242
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                    +ien s+r+ t+ kR++g   K +E+ +LCd+++a +i+s+
  FANhyb_rscf00000038.1.g00023.1 10 FIENMSQRKSTYRKRKKGFTTKMNEIGILCDVKAAAVIYSP 50
                                    8**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.498149IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-17183IPR002100Transcription factor, MADS-box
CDDcd002663.84E-18284No hitNo description
PRINTSPR004041.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-121050IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARRKVRLQF IENMSQRKST YRKRKKGFTT KMNEIGILCD VKAAAVIYSP FETEPVVIPD  60
HETAVQLFTE WRDMPEMERT KRMVTQEMFL RQRIQKTRDQ IRKIKRDNKE KELTNTMYGV  120
LHDWKLDPIY KLDLKDVNEL KSTIERYIHQ TRMIKQNATV QESHENRQNQ TVDQPTAMEL  180
GLTTWTPFGE GTSRSMEQQT QQQQQSQVAA EPASMELGLT TWTPFGEGTI RAFEQQTQQQ  240
QQYQEVAEPA SMELSLTRRT PFGEGNSRNM EQQTQQQQYQ AAVEAQSMEE TQHQLMQFLA  300
HREQQQQQMM FQQQQYPIAA QWQQQQQQQQ MMYQQSTWFS NILNPQTPPQ TMDFLNPLAP  360
LQPGAFGDYV SSGSATQLYA PLPPGTLGDH NNNGNATWPD DSSFRFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLQFIENMSQRKSTYRKRK
22125RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458809.10.0PREDICTED: agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3386122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.16e-31AGAMOUS-like 38