PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000036.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 280aa    MW: 31955.8 Da    PI: 4.7147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000036.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-131461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  FANhyb_rscf00000036.1.g00002.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                                    89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg++T+ E+ ++++++  lG++ W++Ia++++ gRt++++k++w++
  FANhyb_rscf00000036.1.g00002.1  67 RGAFTEAEENQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466891.95E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-111461IPR001005SANT/Myb domain
CDDcd001671.65E-41661No hitNo description
PROSITE profilePS5129426.35762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2665116IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1567110IPR001005SANT/Myb domain
CDDcd001672.05E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEAEENQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDSVNNKAIE PKESMEENKE MVTGISTELG QDNGLEPKLL QDEDNGKGFE ELPNEVELSA  180
FDETTDVLKN YDMFCGSLDL EEFMLNQGVS NSSTTSSNNT SAATTTTNSS FSVEESNYNP  240
SIIGDQLLLQ QNYLQQWVES VDSMLSWDGF NNLEQDLFYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468715.11e-178PREDICTED: myb-related protein 315
TrEMBLA0A2P6S6221e-172A0A2P6S622_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004306403.11e-177(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-80myb domain protein 40