PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000031.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 281aa MW: 29936.2 Da PI: 7.5257

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000031.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.7	9e-37	32	89	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++l+cprC+st tkfCyynny+lsqPr+fC++CrryWt+GG+lr+vPvGgg+rk+ + FANhyb_rscf00000031.1.g00006.1 32 AEKLPCPRCNSTVTKFCYYNNYNLSQPRHFCRGCRRYWTHGGTLRDVPVGGGTRKKPR 89 57899**************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	33	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	34	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSTTPPEFPD LKRPRLIQSM AAAYPYPPPS SAEKLPCPRC NSTVTKFCYY NNYNLSQPRH 60 FCRGCRRYWT HGGTLRDVPV GGGTRKKPRF SHHHRASPSN SSSSPSSSSL THETKPASDS 120 AVEKPDLPSN QTQLQLLNLN DNVGSETGLS FSSMMMMNSQ EQPGFLSLGG YGYGYVYGSG 180 YGSGFVHGFQ QGYGYGAGAS GVDFPAEIVY GAPVAASSGF DMNTWQMAVA DHGGQGGGLV 240 NWPEVQILNS MPAVSGGGGG ALKEEKVADS STSSCLDFPA F

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00189	DAP	Transfer from AT1G47655	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293233.1	1e-168	PREDICTED: dof zinc finger protein DOF1.6
TrEMBL	A0A2P6PYF0	1e-109	A0A2P6PYF0_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004293233.1	1e-167	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-32	OBF binding protein 1