PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000024.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 660aa    MW: 75389.9 Da    PI: 6.8828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000024.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.8e-121902681487
                                     T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                              B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                      r+ +   fa eh  k  +  ++tl+++ g  +W+v++i     +++ ++++ ++GWk+F ++n L+egD++v++++++
  FANhyb_rscf00000024.1.g00009.1 190 TRVFINSAFALEHFCKDGSCCDVTLQNTLGdTTWTVQCISyaisDGRMRTVLSGAGWKSFRQDNLLEEGDVLVLEVIEE 268
                                     46899999*****555556679*****6666*******6668755555558888*********************8764 PP
2B3361.2e-11328414997
                                     HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                              B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                       lk g   lp   ++e+g++ + +  + l+    g+ W+++l+ + +++r++l+kGW+eF++   L++gD+ +F+++g
  FANhyb_rscf00000024.1.g00009.1 328 EDLKDGKKELPPAAVREYGHQMADH--MFLKVpNCGEHWKIELRTSPRRDRMWLEKGWEEFASFYLLDQGDMATFSFEG 404
                                     5567777889********9998886..555553479*******99999999**************************99 PP

                                     S.SEE..EEEEE CS
                              B3  87 r.sefelvvkvf 97 
                                     + s f  +v+++
  FANhyb_rscf00000024.1.g00009.1 405 EhSHF--HVSIY 414
                                     76777..88876 PP
3B3474.7e-155205991389
                                     TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                              B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                                     s+r+ +  +fa+eh +k  +  +++l++ +g r W+++++  +++ gr   ++ ++GW+ F ++n+L+egD++v+++++
  FANhyb_rscf00000024.1.g00009.1 520 SCRVFINHPFAAEHFYKADTCCDVMLQNIQGdRAWTIQCTSyKRSNGRieaIISGTGWRAFRQDNHLEEGDICVLEVIE 598
                                     689***********77777888******8888*******6625555558889999*********************765 PP

                                     SSE CS
                              B3  87 rse 89 
                                       e
  FANhyb_rscf00000024.1.g00009.1 599 --E 599
                                     ..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.08E-1118115No hitNo description
PROSITE profilePS5086310.41920117IPR003340B3 DNA binding domain
SMARTSM010190.02220117IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-1021116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1022115IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-828115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-11170272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-9172273IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-9177270No hitNo description
SMARTSM010190.0035183279IPR003340B3 DNA binding domain
PfamPF023626.0E-9190268IPR003340B3 DNA binding domain
PROSITE profilePS508639.122212279IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-12317416IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-12317414IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-12318415No hitNo description
PROSITE profilePS5086311.364320417IPR003340B3 DNA binding domain
SMARTSM010190.003321417IPR003340B3 DNA binding domain
PfamPF023622.3E-9326414IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-13501604IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-10503604IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-5509610IPR003340B3 DNA binding domain
PfamPF023625.3E-12520599IPR003340B3 DNA binding domain
CDDcd100178.03E-8520595No hitNo description
PROSITE profilePS508638.713543610IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MGERNQNGKR PAVSERSPGF CLRIQSREDL KDGKKEIPPA AVRKYGDQIA DHIFLKVPNC  60
GTHWKIELRT SPRRDRMWLE KGWEELASFY LLDQGDLATF TAEGEDAQFR IRIFSWDDME  120
IYYPIRGGGA DLSRPKRKET RAEVEAEAGA ISVSAGSSAD EHQNDVSKVS SFRSDRPCLN  180
VPITATSLTT RVFINSAFAL EHFCKDGSCC DVTLQNTLGD TTWTVQCISY AISDGRMRTV  240
LSGAGWKSFR QDNLLEEGDV LVLEVIEERS WYINLRLLQF VLFFDSLRSS NLRLQMASSS  300
SSLAEKEKRH GVSEEDSPAF CLRIFSREDL KDGKKELPPA AVREYGHQMA DHMFLKVPNC  360
GEHWKIELRT SPRRDRMWLE KGWEEFASFY LLDQGDMATF SFEGEHSHFH VSIYSWDDME  420
IEYPIRSGGA GVSTPERKEI GTEAVAIASS LSHRSSVAVR GKDKVRRRRR RQTGFEAEAR  480
AISVSSRCSA DEHEYDTSQM SSFRSDKPFL DIRIPAKHLS CRVFINHPFA AEHFYKADTC  540
CDVMLQNIQG DRAWTIQCTS YKRSNGRIEA IISGTGWRAF RQDNHLEEGD ICVLEVIEEL  600
EYHLKERLVI DGVQREYEFR GSIAVYVTMS SGKQATKDDR ATCFLIQNTR NSRRKKDIVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465470RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307940.10.0PREDICTED: B3 domain-containing protein At5g18090-like
TrEMBLA0A2P6SP921e-167A0A2P6SP92_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307940.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2215024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-09B3 family protein