PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000023.1.g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28619.4 Da PI: 7.8276 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 139.3 | 1e-43 | 89 | 173 | 18 | 102 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 + rikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ FANhyb_rscf00000023.1.g00024.1 89 SSNNSSFRIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 167 5555557************************************************************************ PP NF-YC 97 prdelk 102 prdelk FANhyb_rscf00000023.1.g00024.1 168 PRDELK 173 ***975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.17E-25 | 85 | 173 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.6E-34 | 96 | 169 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-17 | 96 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDHSEQTQQQ LQQQQQQHHH QQQPPVVGVV AGSGQMSYAP PSYQTAPMVA SGTPAVAIPS 60 PTSRPRLSLI PHIRLPTSKH ITSTTNSSSS NNSSFRIKKI MKADEDVRMI SAEAPVIFAK 120 ACEIFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD ELKEEGLGVT 180 KANIPVVGSA ADLPYYYVPP QHPVGAPGMI MGKPVDQATM YGAQQPRPPM AFMPWTQSQP 240 QQPLPQQQQQ TQQQQTDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-45 | 79 | 169 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306566.1 | 1e-122 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_004306567.1 | 1e-122 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011468848.1 | 1e-122 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-60 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2P6Q892 | 1e-119 | A0A2P6Q892_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004306566.1 | 1e-121 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-61 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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