PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000020.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 744aa MW: 81571.2 Da PI: 6.1834 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.2e-20 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k FANhyb_rscf00000020.1.g00010.1 61 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116 789999***********************************************998 PP | |||||||
2 | START | 219.2 | 1.3e-68 | 253 | 477 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHC CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveell 66 ela +a++el+++a+a++p+Wv +++n+de++++f+++ + ++ea+r+s++v+m++++lve+l+ FANhyb_rscf00000020.1.g00010.1 253 ELAVSAMEELIRMAQAGDPLWVPAHdnsssthhDILNEDEYMRTFPRGLGpkplgLRSEASRESALVIMNHVNLVEILM 331 57899*****************88888899***************99888***************************** PP CCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TT CS START 67 ddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseq 134 d++ qW++ + +a+tl+ +s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds + FANhyb_rscf00000020.1.g00010.1 332 DVN-QWSTVFCgivsRAMTLDILSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDSLR 409 ***.******99999**************************************************************** PP S--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 135 kppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ + R +++pSg+li++++ng+skv+wvehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+ FANhyb_rscf00000020.1.g00010.1 410 PNS----ISRTRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 477 *98....69999**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 44 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-19 | 45 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-19 | 59 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.17E-19 | 60 | 119 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 61 | 116 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 9.16E-36 | 244 | 479 | No hit | No description |
PROSITE profile | PS50848 | 45.113 | 244 | 480 | IPR002913 | START domain |
CDD | cd08875 | 8.51E-128 | 248 | 476 | No hit | No description |
SMART | SM00234 | 3.6E-68 | 253 | 477 | IPR002913 | START domain |
Pfam | PF01852 | 7.5E-58 | 254 | 477 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.1E-6 | 360 | 477 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-26 | 504 | 735 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MFQPGMFDSH HMSMLDMSTH KSSESDMGRS RDDDFETKSG TETTDAPSGD ELDPSQPRPK 60 RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE 120 RHENSILKNE NDKLRAENNR YKEALSNATC PNCGGPAALG EMSFDEQHLR IENARLHEEI 180 DRISAIAAKY VGKPMSSSFS HLSSSQGPSR SLDLAVSSFG APQSGYVGEM YGSGDLLRSV 240 SVPTDADKPL IVELAVSAME ELIRMAQAGD PLWVPAHDNS SSTHHDILNE DEYMRTFPRG 300 LGPKPLGLRS EASRESALVI MNHVNLVEIL MDVNQWSTVF CGIVSRAMTL DILSTGVAGN 360 YNGALQVMSA EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDSLRP NSISRTRRRP 420 SGCLIQELPN GYSKVIWVEH VEVDDRAVHN IYRPLVNSGL AFGAKRWVAT LDRQCERLAS 480 SMANNIPAGD LCGTCFLLII TSTEGRKSML KLAQRMVLSF CTGVGASTAH AWTTLSATGS 540 DDVRVMTRKS MDDPGRPPGI VLSAATSFWL PVPPKRVFDF LRDENSRSEW DILSNGGLVQ 600 EMAHIANGRD PGNCVSLLRV NSANSSQSNM LILQESCTDS TGSYVIYAPV DIVAMNVVLS 660 GGDPDYVALL PSGFAILPDG PPAGGAGGIL DVGSGGSLLT VAFQILVDSV PTAKLSLGSV 720 ATVNNLIKCT VERIRTAVTC DQNP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293268.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A2P6Q2V9 | 0.0 | A0A2P6Q2V9_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family | ||||
STRING | XP_004293268.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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