PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000019.1.g00014.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 532aa MW: 59274.1 Da PI: 8.979

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000019.1.g00014.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	146.4	2.8e-45	9	164	1	165
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkeelleelkv 77 +d+++ se++Cyv+CnfCnt+lav +P++ ++ +vtv+CGhC++l ++ + ++ q+++a ++ + ++ +l FANhyb_rscf00000019.1.g00014.1 9 MDLVQPSEHLCYVRCNFCNTVLAVGLPFKRMMDTVTVKCGHCSNLSFLTTRPNNpiQIQPAPHQCQ---INDYPTTLTL 84 578899************************************9887777665436666666532...2333334444 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaa 156 +++ + +s+s+s ++ +l e+ ++p++p ++ rvPsaynrf+keeiqrika+nP+i hreafsaa FANhyb_rscf00000019.1.g00014.1 85 HQSYSTDSRRGGHSSSSSSPT-SL---ESPSSPKAPF----HLRKHRVPSAYNRFMKEEIQRIKAANPEIPHREAFSAA 155 443333333333333333333.22...2233333333....24578***************************** PP YABBY 157 aknWahfPk 165 aknWa +P FANhyb_rscf00000019.1.g00014.1 156 AKNWARYPS 164 *****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-50	14	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-6	121	163	IPR009071	High mobility group box domain
CDD	cd01390	2.58E-5	123	159	No hit	No description
Gene3D	G3DSA:1.10.30.10	1.9E-4	123	165	IPR009071	High mobility group box domain
Pfam	PF08449	6.2E-83	205	493	IPR013657	UAA transporter
SuperFamily	SSF103481	6.28E-5	393	494	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0055085	Biological Process	transmembrane transport

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MNLEDKVTMD LVQPSEHLCY VRCNFCNTVL AVGLPFKRMM DTVTVKCGHC SNLSFLTTRP 60 NNPIQIQPAP HQCQINDYPT TLTLHQSYST DSRRGGHSSS SSSPTSLESP SSPKAPFHLR 120 KHRVPSAYNR FMKEEIQRIK AANPEIPHRE AFSAAAKNWA RYPSSSGEAA ATASGSSKKL 180 KEMKNEDQTR FLFWISLSDR PVWQQFLICS SGFFFGYLVN GICEEYVYNR LQFSYGWYFT 240 FVQGFVYLGF IYLQGFTTKK MVNPWRTYVK LSAVLMGSHG LTKGSLAWLN YPAQIMFKST 300 KVLPVMVMGA FIPGLRRKYP IHEYISAILL VVGLIIFTLA DANTSPNFSI LGVVMISSAL 360 IMDAFMGNVQ EAIFTLNPDT TQTEMLFCST VVGLPMLLPP MILTGELFKA WNSCAEHPYV 420 YGVLVFEAMA TYVGQVSVLS LIALFGAATT AMITTARKAV TLLLSYMIFT KPLTEQHGTG 480 LMLIAAGIML KMVPENQFAK HAKSIKDAVL MMSPKANEIG LEVDEEVNKP LV

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MNLEDKVTMD LVQPSEHLCY VRCNFCNTVL AVGLPFKRMM DTVTVKCGHC SNLSFLTTRP  60
NNPIQIQPAP HQCQINDYPT TLTLHQSYST DSRRGGHSSS SSSPTSLESP SSPKAPFHLR  120
KHRVPSAYNR FMKEEIQRIK AANPEIPHRE AFSAAAKNWA RYPSSSGEAA ATASGSSKKL  180
KEMKNEDQTR FLFWISLSDR PVWQQFLICS SGFFFGYLVN GICEEYVYNR LQFSYGWYFT  240
FVQGFVYLGF IYLQGFTTKK MVNPWRTYVK LSAVLMGSHG LTKGSLAWLN YPAQIMFKST  300
KVLPVMVMGA FIPGLRRKYP IHEYISAILL VVGLIIFTLA DANTSPNFSI LGVVMISSAL  360
IMDAFMGNVQ EAIFTLNPDT TQTEMLFCST VVGLPMLLPP MILTGELFKA WNSCAEHPYV  420
YGVLVFEAMA TYVGQVSVLS LIALFGAATT AMITTARKAV TLLLSYMIFT KPLTEQHGTG  480
LMLIAAGIML KMVPENQFAK HAKSIKDAVL MMSPKANEIG LEVDEEVNKP LV

Functional Description ? help Back to Top
Source	Description
UniProt	Sugar transporter involved in the transport of UDP-galactose form the cytoplasm into the Golgi apparatus. {ECO:0000269\|PubMed:15891899}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298355.1	0.0	PREDICTED: UDP-galactose/UDP-glucose transporter 2-like
Swissprot	Q29Q28	0.0	UTR2_ARATH; UDP-galactose/UDP-glucose transporter 2
TrEMBL	A0A2P6R2F0	0.0	A0A2P6R2F0_ROSCH; Putative UAA transporter
STRING	XP_004298355.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	1e-47	YABBY family protein

Publications ? help Back to Top
Norambuena L, et al. Transport of UDP-galactose in plants. Identification and functional characterization of AtUTr1, an Arabidopsis thaliana UDP-galactos/UDP-glucose transporter. J. Biol. Chem., 2002. 277(36): p. 32923-9 [PMID:12042319] Bakker H, et al. Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line. Glycobiology, 2005. 15(2): p. 193-201 [PMID:15456736] Norambuena L, et al. AtUTr2 is an Arabidopsis thaliana nucleotide sugar transporter located in the Golgi apparatus capable of transporting UDP-galactose. Planta, 2005. 222(3): p. 521-9 [PMID:15891899] Rautengarten C, et al. The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(31): p. 11563-8 [PMID:25053812]