PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000019.1.g00010.1 | ||||||||
Common Name | AP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28520.4 Da PI: 8.4746 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.2 | 1.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl ey++ FANhyb_rscf00000019.1.g00010.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSNKGKLSEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 101.2 | 1.4e-33 | 88 | 174 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + ++ e+a+Lk ++e Lqr++Rh+lGedL+sLs+ke+q+Leqq++++lk+iRs+Kn+l++e+i+elq+kek+++e+n+ FANhyb_rscf00000019.1.g00010.1 88 QGNWPFEHARLKVKVELLQRNLRHYLGEDLDSLSIKEIQSLEQQIDTALKQIRSRKNQLMHESISELQRKEKAIKEQNN 166 568899************************************************************************* PP K-box 93 aLrkklee 100 L+kk++e FANhyb_rscf00000019.1.g00010.1 167 LLSKKIKE 174 *****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.805 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-33 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.22E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 2.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.586 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-28 | 88 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALIVFSN KGKLSEYATD 60 SCMENILERY ERYSYAERQL VEPDFDPQGN WPFEHARLKV KVELLQRNLR HYLGEDLDSL 120 SIKEIQSLEQ QIDTALKQIR SRKNQLMHES ISELQRKEKA IKEQNNLLSK KIKEHEKNVA 180 EAQEVHDWEQ QQQNHGLNLL AQGPIPCLNM GGTQQNDQFL QVRRNQLDLT LEPSLYSCHL 240 GCFAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297215.1 | 1e-178 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-124 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | H6V2U0 | 1e-178 | H6V2U0_FRAAN; AP1-like transcription factor | ||||
STRING | XP_004297215.1 | 1e-177 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-114 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|