PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000015.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 898aa    MW: 98509.8 Da    PI: 6.6621
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000015.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1971129357
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  FANhyb_rscf00000015.1.g00005.1  71 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 129
                                     5679*****************************************************97 PP
2START173.41.5e-542154312205
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHH.......HHHHHCCCGGCT- CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlal.......lveellddkeqWd 73 
                                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++       lv+e+l+d++ W 
  FANhyb_rscf00000015.1.g00005.1 215 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRvsssppgLVSEILKDRPSWF 293
                                     7899************************************************9877654233333389*********** PP

                                     TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-E CS
                           START  74 etlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRae 146
                                     ++++++++l+v+s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae
  FANhyb_rscf00000015.1.g00005.1 294 RNCRSVDVLNVLSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAE 372
                                     ******************************************************************9988899****** PP

                                     ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                           START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                     +lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  ++kt++a+l+++++
  FANhyb_rscf00000015.1.g00005.1 373 MLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRNLRQ 431
                                     *******************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9266130IPR001356Homeobox domain
SMARTSM003895.3E-1668134IPR001356Homeobox domain
SuperFamilySSF466894.02E-1770133IPR009057Homeodomain-like
CDDcd000866.30E-1771131No hitNo description
PfamPF000461.2E-1672129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1873129IPR009057Homeodomain-like
CDDcd146861.93E-6123162No hitNo description
PROSITE profilePS5084825.608205427IPR002913START domain
CDDcd088753.49E-77209432No hitNo description
Gene3DG3DSA:3.30.530.202.4E-22214428IPR023393START-like domain
SMARTSM002341.3E-41214432IPR002913START domain
SuperFamilySSF559612.33E-36214432No hitNo description
PfamPF018525.8E-52215431IPR002913START domain
PfamPF086706.4E-51757897IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MPPAASPSPS PAPSPTPTFS TTPTRLHVGK CRRSFQVLES AKQNISMAVT SSSSCKELSG  60
GGMKMQMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSN IEPKQIKVWF  120
QNRRCREKQR KEASRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENSY FRQQTQNTTL  180
ATTDTSCESV VTSGQHHLTP QHPPRDASPA GLLSIAEETL AEFLSKATGT AVEWVQLPGM  240
KPGPDSIGIV AISHGCTGVA ARACGLVGLE PTRVSSSPPG LVSEILKDRP SWFRNCRSVD  300
VLNVLSTGNG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV LEDGSLVVCE RSLNNTQNGP  360
SMPPVQNFVR AEMLPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLAQK  420
TTMAALRNLR QISLEVSQPN TNGWGRRPAA LRALSQRLSK GFNEAVNGFT DEGWSILESD  480
GVDDVTLLVN SSPGKMMGAN LYANGVPSMS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  540
WADRSIDAYS AAAIKAGPCG MIGSRAGSFG DQVILPLAHT IEHEEFMEVI KIENMGHYRD  600
DMMMPAADIF LLQLCSGVDE NAVGTCAELV FAPIDASFSD DAPILPSGFR IIPLDSHMDA  660
PSPNRTLDLA SALEVGPTGN RSSGDNAGHC GSTKSVMTIA FQFAFEIHLQ DNVASMARQY  720
IRSIIASVQR VALALSPSRF GSHAGFRPPP GTPEAQTLAG WICQSYRCYL GVELLKSEGS  780
ESILKSLWHH SDAILCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDNGRKIL  840
FTEFPQIMQQ GFMCLQGGIC MSSMGRPISY ERAVAWKVLN EEETAHCICF MFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291167.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2P6Q0430.0A0A2P6Q043_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004291167.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]