PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000014.1.g00012.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 480aa    MW: 52501.5 Da    PI: 6.6225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000014.1.g00012.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.44.6e-26149205259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                      DgynWrKYGqK+vk+ + +rsYYrCt+++C+vkk +e ++  ++++ei+Y+++H+h+
  FANhyb_rscf00000014.1.g00012.1 149 ADGYNWRKYGQKQVKSPPGSRSYYRCTFSECSVKK-IESCDISGHLIEIVYKSQHTHD 205
                                     7********************************98.*********************7 PP
2WRKY73.52.7e-23320387359
                                     -SS-EEEEEEE--TT-SS-E...........EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefpr...........sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     Dgy+WrKYGqK+vkg+++pr           +YYrCtsagCpv+k++e++ ++++ v+itY+g H+h+
  FANhyb_rscf00000014.1.g00012.1 320 DGYRWRKYGQKMVKGNPHPRfseivfdslcrNYYRCTSAGCPVRKHIETALDNTSGVIITYKGIHDHD 387
                                     9*****************95444444444448***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.85E-20147207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-22147207IPR003657WRKY domain
SMARTSM007741.5E-24148206IPR003657WRKY domain
PROSITE profilePS5081118.337150207IPR003657WRKY domain
PfamPF031062.3E-18150205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-28303389IPR003657WRKY domain
PROSITE profilePS5081126.383313389IPR003657WRKY domain
SuperFamilySSF1182901.7E-22314389IPR003657WRKY domain
SMARTSM007741.2E-31318388IPR003657WRKY domain
PfamPF031069.2E-17320386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAEHESLEAK ITENDEEKQG LETLAVPQLA ENDQYRGVGV KSAAEGIGDA LIQEQIGISH  60
QQVLASASYQ HSQGQTQNLQ QSISCPTSLS ELSPTSVTQS ISPAPSPVLP EQRPSLQKVN  120
GLCTLEEDKQ LSSDFKYISP VPFVKTSAAD GYNWRKYGQK QVKSPPGSRS YYRCTFSECS  180
VKKIESCDIS GHLIEIVYKS QHTHDPPRRS NCTREIKVAS SAECVGNNAV EYPCTITNDS  240
ELSTTSKEPI QENPVPERKR QSSSDSDGNG DVMMNEEHIN DPEAKKRQKS NSEYSDSLLK  300
AGKKPKFVVH AAGDVGISGD GYRWRKYGQK MVKGNPHPRF SEIVFDSLCR NYYRCTSAGC  360
PVRKHIETAL DNTSGVIITY KGIHDHDMPV PKKRHGAPSA PLVAAAAPAS MNNLQIVQTD  420
TGEQQSSTQR SVEKGSHQAS TQWSVDKGGE LTGETLELGG EKAMESARTL LSIGFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22306389274WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287129.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLA0A2P6RI620.0A0A2P6RI62_ROSCH; Putative transcription factor WRKY family
STRINGXP_004287129.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-103WRKY DNA-binding protein 32